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BMC Medical Genomics

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Editor-in-Chief
Melissa Norton, MD

Medical Editor
Jigisha Patel, MRCP PhD

In-house Editor
Scott Edmunds




BMC Medical Genomics, Volume 1

 

 

 

Research article
Tobacco use induces anti-apoptotic, proliferative patterns of gene expression in circulating leukocytes of Caucasian males
Peter C Charles, Brian D Alder, Eleanor G Hilliard, Jonathan C Schisler, Robert E Lineberger, Joel S Parker, Sabeen Mapara, Samuel S Wu, Andrea Portbury, Cam Patterson, George A Stouffer
BMC Medical Genomics 2008, 1:38 (18August2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
An integrative genomic approach reveals coordinated expression of intronic miR-335, miR-342, and miR-561 with deregulated host genes in multiple myeloma
Domenica Ronchetti, Marta Lionetti, Laura Mosca, Luca Agnelli, Adrian Andronache, Sonia Fabris, Giorgio Lambertenghi Deliliers, Antonino Neri
BMC Medical Genomics 2008, 1:37 (13August2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Differential expression of genes mapping to recurrently abnormal chromosomal regions characterize neuroblastic tumours with distinct ploidy status
Cinzia Lavarino, Idoia Garcia, Carlos Mackintosh, Nai-Kong V Cheung, Gema Domenech, Jos Ros, Noelia Perez, Eva Rodrguez, Carmen de Torres, William L Gerald, Esperanza Tuset, Sandra Acosta, Helena Beleta, Enrique de lava, Jaume Mora
BMC Medical Genomics 2008, 1:36 (13August2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Role of Caveolin 1, E-Cadherin, Enolase 2 and PKCalpha on resistance to methotrexate in human HT29 colon cancer cells
Elisabet Selga, Cristina Morales, Vronique No, Miguel A Peinado, Carlos J Ciudad
BMC Medical Genomics 2008, 1:35 (11August2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Influence of monolayer, spheroid, and tumor growth conditions on chromosome 3 gene expression in tumorigenic epithelial ovarian cancer cell lines
Neal AL Cody, Magdalena Zietarska, Ali Filali-Mouhim, Diane M Provencher, Anne-Marie Mes-Masson, Patricia N Tonin
BMC Medical Genomics 2008, 1:34 (7August2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Technical advance
An approach to analyse the specific impact of rapamycin on mRNA-ribosome association.
Raphael Genolet, Tanguy Araud, Laetitia Maillard, Pascale Jaquier-Gubler, Joseph Curran
BMC Medical Genomics 2008, 1:33 (1August2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
My sister's keeper?: genomic research and the identifiability of siblings
Christopher A Cassa, Brian Schmidt, Isaac S Kohane, Kenneth D Mandl
BMC Medical Genomics 2008, 1:32 (25July2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Increased cell motility and invasion upon knockdown of lipolysis stimulated lipoprotein receptor (LSR) in SW780 bladder cancer cells
Malene Herbsleb, Karin Birkenkamp-Demtroder, Thomas Thykjaer, Carsten Wiuf, Anne-Mette K Hein, Torben F rntoft, Lars Dyrskjt
BMC Medical Genomics 2008, 1:31 (22July2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Gene expression in periodontal tissues following treatment
Thomas Beikler, Ulrike Peters, Karola Prior, Martin Eisenacher, Thomas F Flemmig
BMC Medical Genomics 2008, 1:30 (7July2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Characterization of global transcription profile of normal and HPV-immortalized keratinocytes and their response to TNF treatment
Lara Termini, Enrique Boccardo, Gustavo H Esteves, Roberto Hirata Jr, Waleska K Martins, Anna Estela L Colo, E Jordo Neves, Luisa Lina Villa, Luiz FL Reis
BMC Medical Genomics 2008, 1:29 (27June2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Pathway analysis reveals functional convergence of gene expression profiles in breast cancer
Ronglai Shen, Arul M Chinnaiyan, Debashis Ghosh
BMC Medical Genomics 2008, 1:28 (27June2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Molecular analysis of the vaginal response to estrogens in the ovariectomized rat and postmenopausal woman
Scott A Jelinsky, Sung E Choe, Judy S Crabtree, Monette M Cotreau, Ewa Wilson, Kathryn Saraf, Andrew J Dorner, Eugene L Brown, Bryan J Peano, Xiaochun Zhang, Richard C Winneker, Heather A Harris
BMC Medical Genomics 2008, 1:27 (25June2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Whole genome assessment of the retinal response to diabetes reveals a progressive neurovascular inflammatory response
Robert M Brucklacher, Kruti M Patel, Heather D VanGuilder, Georgina V Bixler, Alistair J Barber, David A Antonetti, Cheng-Mao Lin, Kathryn F LaNoue, Thomas W Gardner, Sarah K Bronson, Willard M Freeman
BMC Medical Genomics 2008, 1:26 (13June2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Genome wide SNP comparative analysis between EGFR and KRAS mutated NSCLC and characterization of two models of oncogenic cooperation in non-small cell lung carcinoma
Hlne Blons, Karine Pallier, Delphine Le Corre, Claire Danel, Maxime Tremblay-Gravel, Claude Houdayer, Elizabeth Fabre-Guillevin, Marc Riquet, Philippe Dessen, Pierre Laurent-Puig
BMC Medical Genomics 2008, 1:25 (12June2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Technical advance
Genotyping panel for assessing response to cancer chemotherapy
Zunyan Dai, Audrey C Papp, Danxin Wang, Heather Hampel, Wolfgang Sadee
BMC Medical Genomics 2008, 1:24 (11June2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
A genome-wide search replicates evidence of a quantitative trait locus for circulating angiotensin I-converting enzyme (ACE) unlinked to the ACE gene
Colin A McKenzie, Xiaofeng Zhu, Terrence E Forrester, Amy Luke, Adebowale A Adeyemo, Nourdine Bouzekri, Richard S Cooper
BMC Medical Genomics 2008, 1:23 (10June2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Worldwide population differentiation at disease-associated SNPs
Sean Myles, Dan Davison, Jeffrey Barrett, Mark Stoneking, Nic Timpson
BMC Medical Genomics 2008, 1:22 (4June2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Association of ABCB1 genetic variants with renal function in Africans and in Caucasians
Murielle Bochud, Chin B Eap, Marc Maillard, Toby Johnson, Peter Vollenweider, Pascal Bovet, Robert C Elston, Sven Bergmann, Jacques S Beckmann, Dawn M Waterworth, Vincent Mooser, Anne Gabriel, Michel Burnier
BMC Medical Genomics 2008, 1:21 (2June2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Generation of a non-small cell lung cancer transcriptome microarray
Austin Tanney, Gavin R Oliver, Vadim Farztdinov, Richard D Kennedy, Jude M Mulligan, Ciaran E Fulton, Susan M Farragher, John K Field, Patrick G Johnston, D Paul Harkin, Vitali Proutski, Karl A Mulligan
BMC Medical Genomics 2008, 1:20 (30May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC) and its application for DNA methylation analysis
Eleni M Tomazou, Vardhman K Rakyan, Gregory Lefebvre, Robert Andrews, Peter Ellis, David K Jackson, Cordelia Langford, Matthew D Francis, Liselotte Bckdahl, Marcos Miretti, Penny Coggill, Diego Ottaviani, Denise Sheer, Adele Murrell, Stephan Beck
BMC Medical Genomics 2008, 1:19 (30May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Whole genome identification of Mycobacterium tuberculosis vaccine candidates by comprehensive data mining and bioinformatic analyses
Anat Zvi, Naomi Ariel, John Fulkerson, Jerald C Sadoff, Avigdor Shafferman
BMC Medical Genomics 2008, 1:18 (28May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Pro-neural transcription factors as cancer markers
Maria Vias, Charlie E Massie, Philip East, Helen Scott, Anne Warren, Zongxiang Zhou, Alexander Yu Nikitin, David E Neal, Ian G Mills
BMC Medical Genomics 2008, 1:17 (19May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Investigating the complex genetic architecture of ankle-brachial index, a measure of peripheral arterial disease, in non-Hispanic whites
Sharon LR Kardia, M Todd Greene, Eric Boerwinkle, Stephen T Turner, Iftikhar J Kullo
BMC Medical Genomics 2008, 1:16 (15May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Classification of human cancers based on DNA copy number amplification modeling
Samuel Myllykangas, Jarkko Tikka, Tom Bhling, Sakari Knuutila, Jaakko Hollmn
BMC Medical Genomics 2008, 1:15 (14May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
The role of the small intestine in the development of dietary fat-induced obesity and insulin resistance in C57BL/6J mice
Nicole JW de Wit, Hanneke Bosch-Vermeulen, Philip J de Groot, Guido JEJ Hooiveld, Mechteld M Grootte Bromhaar, Jenny Jansen, Michael Mller, Roelof van der Meer
BMC Medical Genomics 2008, 1:14 (6May2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Medicine]

Research article
The gene expression profiles of primary and metastatic melanoma yields a transition point of tumor progression and metastasis
Adam I Riker, Steven A Enkemann, Oystein Fodstad, Suhu Liu, Suping Ren, Christopher Morris, Yaguang Xi, Paul Howell, Brandon Metge, Rajeev S Samant, Lalita A Shevde, Wenbin Li, Steven Eschrich, Adil Daud, Jingfang Ju, Jaime Matta
BMC Medical Genomics 2008, 1:13 (28April2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Database
HIP2: An online database of human plasma proteins from healthy individuals
Sudipto Saha, Scott H Harrison, Changyu Shen, Haixu Tang, Predrag Radivojac, Randy J Arnold, Xiang Zhang, Jake Yue Chen
BMC Medical Genomics 2008, 1:12 (25April2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
Cell cycle correlated genes dictate the prognostic power of breast cancer gene lists
Jonathan D Mosley, Ruth A Keri
BMC Medical Genomics 2008, 1:11 (25April2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Identification of differentially expressed genes in fibroblasts derived from patients with Dupuytren's Contracture
Latha Satish, William A LaFramboise, David B O'Gorman, Sandra Johnson, Benjamin Janto, Bing Siang Gan, Mark E Baratz, Fen Z Hu, J Christopher Post, Garth D Ehrlich, Sandeep Kathju
BMC Medical Genomics 2008, 1:10 (23April2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Technical advance
Expression profiling with RNA from formalin-fixed, paraffin-embedded material
Andrea Oberli, Vlad Popovici, Mauro Delorenzi, Anna Baltzer, Janine Antonov, Sybille Matthey, Stefan Aebi, Hans Jrg Altermatt, Rolf Jaggi
BMC Medical Genomics 2008, 1:9 (19April2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Technical advance
Predictive gene lists for breast cancer prognosis: A topographic visualisation study
Mingmanas Sivaraksa, David Lowe
BMC Medical Genomics 2008, 1:8 (17April2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Identification of molecular pathways affected by pterostilbene, a natural dimethylether analog of resveratrol
Zhiqiang Pan, Ameeta K Agarwal, Tao Xu, Qin Feng, Scott R Baerson, Stephen O Duke, Agnes M Rimando
BMC Medical Genomics 2008, 1:7 (20March2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Midkine is a NF-B-inducible gene that supports prostate cancer cell survival
Zongbing You, Ying Dong, Xiangtian Kong, Laurel A Beckett, Regina Gandour-Edwards, Jonathan Melamed
BMC Medical Genomics 2008, 1:6 (14February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Robust SNP genotyping by multiplex PCR and arrayed primer extension
Mohua Podder, Jian Ruan, Ben W Tripp, Zane E Chu, Scott J Tebbutt
BMC Medical Genomics 2008, 1:5 (31January2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Comparing the old and new generation SELDI-TOF MS: implications for serum protein profiling
Marie-Christine W Gast, Judith YMN Engwegen, Jan HM Schellens, Jos H Beijnen
BMC Medical Genomics 2008, 1:4 (31January2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Tiling resolution array CGH and high density expression profiling of urothelial carcinomas delineate genomic amplicons and candidate target genes specific for advanced tumors
Markus Heidenblad, David Lindgren, Tord Jonson, Fredrik Liedberg, Srinivas Veerla, Gunilla Chebil, Sigurdur Gudjonsson, ke Borg, Wiking Mnsson, Mattias Hglund
BMC Medical Genomics 2008, 1:3 (31January2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research article
Microarray analysis in B cells among siblings with/without MS - role for transcription factor TCF2
Jagannadha R Avasarala, Sridar V Chittur, Ajish D George, John A Tine
BMC Medical Genomics 2008, 1:2 (31January2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article
Biomarker expression patterns that correlate with high grade features in treatment naive, organ-confined prostate cancer
Timothy J McDonnell, Nikhil S Chari, Jeong Hee Cho-Vega, Patricia Troncoso, Xuemei Wang, Carlos E Bueso-Ramos, Kevin Coombes, Shawn Brisbay, Remigio Lopez, George Prendergast, Christopher Logothetis, Kim-Anh Do
BMC Medical Genomics 2008, 1:1 (31January2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

 

 

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