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BMC Bioinformatics publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.

Volume 13 Supplement 19

Proceedings of the Tenth Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics

Proceedings

Tenth Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics

Niteroi, Brazil

17-19 October 2012

Edited by Mathieu Banchette, Marilia D V Braga and Marie-France Sagot

This supplement has not been supported by sponsorship or other external funding.

| Conference website

Proceedings   Open Access

On pairwise distances and median score of three genomes under DCJ

Sergey Aganezov, Max A Alekseyev BMC Bioinformatics 2012, 13(Suppl 19):S1 (19 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sites

Mathieu Blanchette BMC Bioinformatics 2012, 13(Suppl 19):S2 (19 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Gene family assignment-free comparative genomics

Daniel Doerr, Annelyse Thévenin, Jens Stoye BMC Bioinformatics 2012, 13(Suppl 19):S3 (19 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

A flexible ancestral genome reconstruction method based on gapped adjacencies

Yves Gagnon, Mathieu Blanchette, Nadia El-Mabrouk BMC Bioinformatics 2012, 13(Suppl 19):S4 (19 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Medians seek the corners, and other conjectures

Maryam Haghighi, David Sankoff BMC Bioinformatics 2012, 13(Suppl 19):S5 (19 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

From event-labeled gene trees to species trees

Maribel Hernandez-Rosales, Marc Hellmuth, Nicolas Wieseke, Katharina T Huber, Vincent Moulton, Peter F Stadler BMC Bioinformatics 2012, 13(Suppl 19):S6 (19 December 2012)

Abstract | Full text | PDF

Proceedings   Open Access

Multiple genome comparison based on overlap regions of pairwise local alignments

Katharina Jahn, Henner Sudek, Jens Stoye BMC Bioinformatics 2012, 13(Suppl 19):S7 (19 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

A consolidation algorithm for genomes fractionated after higher order polyploidization

Katharina Jahn, Chunfang Zheng, Jakub Kováč, David Sankoff BMC Bioinformatics 2012, 13(Suppl 19):S8 (19 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Reconstructing genome mixtures from partial adjacencies

Ahmad Mahmoody, Crystal L Kahn, Benjamin J Raphael BMC Bioinformatics 2012, 13(Suppl 19):S9 (19 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Compareads: comparing huge metagenomic experiments

Nicolas Maillet, Claire Lemaitre, Rayan Chikhi, Dominique Lavenier, Pierre Peterlongo BMC Bioinformatics 2012, 13(Suppl 19):S10 (19 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Linearization of ancestral multichromosomal genomes

Ján Maňuch, Murray Patterson, Roland Wittler, Cedric Chauve, Eric Tannier BMC Bioinformatics 2012, 13(Suppl 19):S11 (19 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Inference of reticulate evolutionary histories by maximum likelihood: the performance of information criteria

Hyun Jung Park, Luay Nakhleh BMC Bioinformatics 2012, 13(Suppl 19):S12 (19 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion

Mingfu Shao, Yu Lin BMC Bioinformatics 2012, 13(Suppl 19):S13 (19 December 2012)

Abstract | Full text | PDF

Proceedings   Open Access

Restricted DCJ-indel model: sorting linear genomes with DCJ and indels

Poly H da Silva, Raphael Machado, Simone Dantas, Marília DV Braga BMC Bioinformatics 2012, 13(Suppl 19):S14 (19 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Gene trees and species trees: irreconcilable differences

Krister M Swenson, Nadia El-Mabrouk BMC Bioinformatics 2012, 13(Suppl 19):S15 (19 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

A graph-theoretic approach for inparalog detection

Olivier Tremblay-Savard, Krister M Swenson BMC Bioinformatics 2012, 13(Suppl 19):S16 (19 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

ARG-based genome-wide analysis of cacao cultivars

Filippo Utro, Omar Cornejo, Donald Livingstone, Juan Motamayor, Laxmi Parida BMC Bioinformatics 2012, 13(Suppl 19):S17 (19 December 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

TIGER: tiled iterative genome assembler

Xiao-Long Wu, Yun Heo, Izzat El Hajj, Wen-Mei Hwu, Deming Chen, Jian Ma BMC Bioinformatics 2012, 13(Suppl 19):S18 (19 December 2012)

Abstract | Full text | PDF | PubMed


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