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Volume 9 (2011) - October 2011

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Research article   Open Access

Requirement for Pdx1 in specification of latent endocrine progenitors in zebrafish

Robin A Kimmel, Lucas Onder, Armin Wilfinger, Elin Ellertsdottir, Dirk Meyer BMC Biology 2011, 9:75 (31 October 2011)

Abstract | Full text | PDF | PubMed

Research article   Open Access

Sumo-dependent substrate targeting of the SUMO protease Ulp1

Zachary C Elmore, Megan Donaher, Brooke C Matson, Helen Murphy, Jason W Westerbeck, Oliver Kerscher BMC Biology 2011, 9:74 (28 October 2011)

Abstract | Full text | PDF | PubMed

Research article   Open Access

The docking protein p130Cas regulates cell sensitivity to proteasome inhibition

Ming Zhao, Kristiina Vuori BMC Biology 2011, 9:73 (28 October 2011)

Abstract | Full text | PDF | PubMed

Commentary   Open Access

Proteasome inhibition, the pursuit of new cancer therapeutics, and the adaptor molecule p130Cas

Dharminder Chauhan, Kenneth C Anderson BMC Biology 2011, 9:72 (28 October 2011)

Abstract | Full text | PDF | PubMed

Review   Open Access Highly Accessed

Molecular dynamics simulations and drug discovery

Jacob D Durrant, J Andrew McCammon BMC Biology 2011, 9:71 (28 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

Modeling the movements of atoms within macromolecules can predict their conformational flexibility to inform drug discovery. Jacob Durrant and Andrew McCammon explain how this is done in molecular dynamics simulations, reviewing both the successes and current limitations of the approach.

Research article   Open Access

Genome-wide assessment of the carriers involved in the cellular uptake of drugs: a model system in yeast

Karin Lanthaler, Elizabeth Bilsland, Paul D Dobson, Harry J Moss, Pınar Pir, Douglas B Kell, Stephen G Oliver BMC Biology 2011, 9:70 (24 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Commentary   Open Access

Appetite for destruction: the inhibition of glycolysis as a therapy for tuberous sclerosis complex-related tumors

Alfredo Csibi, John Blenis BMC Biology 2011, 9:69 (21 October 2011)

Abstract | Full text | PDF | PubMed

Commentary   Open Access Highly Accessed

Toward a comprehensive language for biological systems

James R Faeder BMC Biology 2011, 9:68 (17 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Biology is complex, and biologists are (mostly) resistant to modeling. James Faeder, lucidly challenging this resistance, welcomes a new rule-based software package reported in a recent paper in BMC Systems Biology that begins to confront the complexity.

Commentary   Open Access Highly Accessed

Host-parasite relationships in the genome

John FY Brookfield BMC Biology 2011, 9:67 (10 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Commenting on a paper in BMC Evolutionary Biology, John Brookfield picks his way elegantly through the minefield of evolutionary issues bearing on the proliferation of transposons in the genomic ecosphere


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