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		Research article Characterization of the stress associated microRNAs in Glycine max by deep sequencing Haiyan Li, Yuanyuan Dong, Hailong Yin, Nan Wang, Jing Yang, Xiuming Liu, Yanfang Wang, Jinyu Wu, Xiaokun Li BMC Plant Biology 2011, 11:170 (23 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Transcriptome analysis of ectopic chloroplast development in green curd cauliflower (Brassica oleracea L. var. botrytis) Xiangjun Zhou, Zhangjun Fei, Theodore W Thannhauser, Li Li BMC Plant Biology 2011, 11:169 (23 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Characterization of Sucrose transporter alleles and their association with seed yield-related traits in Brassica napus L Fupeng Li, Chaozhi Ma, Xia Wang, Changbin Gao, Jianfeng Zhang, Yuanyuan Wang, Na Cong, Xinghua Li, Jing Wen, Bin Yi, Jinxiong Shen, Jinxing Tu, Tingdong Fu BMC Plant Biology 2011, 11:168 (23 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article EST sequencing and gene expression profiling of defence-related genes from Persea americana infected with Phytophthora cinnamomi Waheed Mahomed, Noëlani van den Berg BMC Plant Biology 2011, 11:167 (23 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Differential expression of cysteine desulfurases in soybean Marta D Heis, Elisabeth M Ditmer, Luisa A de Oliveira, Ana Paula G Frazzon, Rogério Margis, Jeverson Frazzon BMC Plant Biology 2011, 11:166 (18 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptional analysis of late ripening stages of grapevine berry Sabine Guillaumie, Romain Fouquet, Christian Kappel, Céline Camps, Nancy Terrier, Dominique Moncomble, Jake D Dunlevy, Christopher Davies, Paul K Boss, Serge Delrot BMC Plant Biology 2011, 11:165 (18 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Adaptation of barley to mild winters: A role for PPDH2 M Cristina Casao, Ildiko Karsai, Ernesto Igartua, M Pilar Gracia, Otto Veisz, Ana M Casas BMC Plant Biology 2011, 11:164 (18 November 2011) Abstract \| Full text \| PDF \| PubMed
		Review Effects of abiotic stress on plants: a systems biology perspective Grant R Cramer, Kaoru Urano, Serge Delrot, Mario Pezzotti, Kazuo Shinozaki BMC Plant Biology 2011, 11:163 (17 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Grant Cramer and colleagues review the role of systems biology in the study of plant responses to abiotic stresses and discuss the future directions for research in this area.
		Research article DOF-binding sites additively contribute to guard cell-specificity of AtMYB60 promoter Eleonora Cominelli, Massimo Galbiati, Alessandra Albertini, Fabio Fornara, Lucio Conti, George Coupland, Chiara Tonelli BMC Plant Biology 2011, 11:162 (16 November 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article Characterization of highly efficient heavy-ion mutagenesis in Arabidopsis thaliana Yusuke Kazama, Tomonari Hirano, Hiroyuki Saito, Yang Liu, Sumie Ohbu, Yoriko Hayashi, Tomoko Abe BMC Plant Biology 2011, 11:161 (15 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article A pair of orthologs of a leucine-rich repeat receptor kinase-like disease resistance gene family regulates rice response to raised temperature Haitao Zhang, Yinglong Cao, Jing Zhao, Xianghua Li, Jinghua Xiao, Shiping Wang BMC Plant Biology 2011, 11:160 (15 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Orthologs of the rice Xa3/Xa26 disease-resistance gene are transcriptionally induced at raised temperatures, leading to the formation of temperature-sensitive lesions, suggesting their involvement in rice temperature sensing rather than resistance to Xanthomonas sp. infection.
		Research article Fortunella margarita Transcriptional Reprogramming Triggered by Xanthomonas citri subsp. citri Abeer A Khalaf, Frederick G Gmitter, Ana Conesa, Joaquin Dopazo, Gloria A Moore BMC Plant Biology 2011, 11:159 (11 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Identification and analysis of phosphorylation status of proteins in dormant terminal buds of poplar Chang-Cai Liu, Chang-Fu Liu, Hong-Xia Wang, Zhi-Ying Shen, Chuan-Ping Yang, Zhi-Gang Wei BMC Plant Biology 2011, 11:158 (11 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Conservation and loss of ribosomal RNA gene sites in diploid and polyploid Fragaria (Rosaceae) Bo Liu, Thomas M Davis BMC Plant Biology 2011, 11:157 (10 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article High resolution melting analysis for the detection of EMS induced mutations in wheat SbeIIa genes Ermelinda Botticella, Francesco Sestili, Antonio Hernandez-Lopez, Andrew Phillips, Domenico Lafiandra BMC Plant Biology 2011, 11:156 (10 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Loss-of-function mutations affecting a specific Glycine max R2R3 MYB transcription factor result in brown hilum and brown seed coats Jason D Gillman, Ashley Tetlow, Jeong-Deong Lee, J Shannon, Kristin Bilyeu BMC Plant Biology 2011, 11:155 (9 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Chemical and transcriptional responses of Norway spruce genotypes with different susceptibility to Heterobasidion spp. infection Marie Danielsson, Karl Lundén, Malin Elfstrand, Jiang Hu, Tao Zhao, Jenny Arnerup, Katarina Ihrmark, Gunilla Swedjemark, Anna-Karin Borg-Karlson, Jan Stenlid BMC Plant Biology 2011, 11:154 (8 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article A 48 SNP set for grapevine cultivar identification José A Cabezas, Javier Ibáñez, Diego Lijavetzky, Dolores Vélez, Gema Bravo, Virginia Rodríguez, Iván Carreño, Angelica M Jermakow, Juan Carreño, Leonor Ruiz-García, Mark R Thomas, José M Martinez-Zapater BMC Plant Biology 2011, 11:153 (8 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Genetic variation of γ-tocopherol methyltransferase gene contributes to elevated α-tocopherol content in soybean seeds Maria S Dwiyanti, Tetsuya Yamada, Masako Sato, Jun Abe, Keisuke Kitamura BMC Plant Biology 2011, 11:152 (7 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article A highly conserved NB-LRR encoding gene cluster effective against Setosphaeria turcica in sorghum Tom Martin, Moses Biruma, Ingela Fridborg, Patrick Okori, Christina Dixelius BMC Plant Biology 2011, 11:151 (3 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Whole-Organ analysis of calcium behaviour in the developing pistil of olive (Olea europaea L.) as a tool for the determination of key events in sexual plant reproduction Krzysztof Zienkiewicz, Juan D Rejón, Cynthia Suárez, Antonio J Castro, Juan de Dios Alché, María Rodríguez García BMC Plant Biology 2011, 11:150 (3 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Transcript and metabolite analysis in Trincadeira cultivar reveals novel information regarding the dynamics of grape ripening Ana M Fortes, Patricia Agudelo-Romero, Marta S Silva, Kashif Ali, Lisete Sousa, Federica Maltese, Young H Choi, Jerome Grimplet, José M Martinez- Zapater, Robert Verpoorte, Maria S Pais BMC Plant Biology 2011, 11:149 (2 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Methodology article Multiallelic epistatic model for an out-bred cross and mapping algorithm of interactive quantitative trait loci Chunfa Tong, Bo Zhang, Zhong Wang, Meng Xu, Xiaoming Pang, Jingna Si, Minren Huang, Rongling Wu BMC Plant Biology 2011, 11:148 (31 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Identification, utilisation and mapping of novel transcriptome-based markers from blackcurrant (Ribes nigrum) Joanne R Russell, Micha Bayer, Clare Booth, Linda Cardle, Christine A Hackett, Pete E Hedley, Linzi Jorgensen, Jenny A Morris, Rex M Brennan BMC Plant Biology 2011, 11:147 (28 October 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Association analysis of frost tolerance in rye using candidate genes and phenotypic data from controlled, semi-controlled, and field phenotyping platforms Yongle Li, Andreas Böck, Grit Haseneyer, Viktor Korzun, Peer Wilde, Chris-Carolin Schön, Donna P Ankerst, Eva Bauer BMC Plant Biology 2011, 11:146 (27 October 2011) Abstract \| Full text \| PDF \| PubMed

	All
		Research article Characterization of the stress associated microRNAs in Glycine max by deep sequencing Haiyan Li, Yuanyuan Dong, Hailong Yin, Nan Wang, Jing Yang, Xiuming Liu, Yanfang Wang, Jinyu Wu, Xiaokun Li BMC Plant Biology 2011, 11:170 (23 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Transcriptome analysis of ectopic chloroplast development in green curd cauliflower (Brassica oleracea L. var. botrytis) Xiangjun Zhou, Zhangjun Fei, Theodore W Thannhauser, Li Li BMC Plant Biology 2011, 11:169 (23 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Characterization of Sucrose transporter alleles and their association with seed yield-related traits in Brassica napus L Fupeng Li, Chaozhi Ma, Xia Wang, Changbin Gao, Jianfeng Zhang, Yuanyuan Wang, Na Cong, Xinghua Li, Jing Wen, Bin Yi, Jinxiong Shen, Jinxing Tu, Tingdong Fu BMC Plant Biology 2011, 11:168 (23 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article EST sequencing and gene expression profiling of defence-related genes from Persea americana infected with Phytophthora cinnamomi Waheed Mahomed, Noëlani van den Berg BMC Plant Biology 2011, 11:167 (23 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Differential expression of cysteine desulfurases in soybean Marta D Heis, Elisabeth M Ditmer, Luisa A de Oliveira, Ana Paula G Frazzon, Rogério Margis, Jeverson Frazzon BMC Plant Biology 2011, 11:166 (18 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Transcriptional analysis of late ripening stages of grapevine berry Sabine Guillaumie, Romain Fouquet, Christian Kappel, Céline Camps, Nancy Terrier, Dominique Moncomble, Jake D Dunlevy, Christopher Davies, Paul K Boss, Serge Delrot BMC Plant Biology 2011, 11:165 (18 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Adaptation of barley to mild winters: A role for PPDH2 M Cristina Casao, Ildiko Karsai, Ernesto Igartua, M Pilar Gracia, Otto Veisz, Ana M Casas BMC Plant Biology 2011, 11:164 (18 November 2011) Abstract \| Full text \| PDF \| PubMed
		Review Effects of abiotic stress on plants: a systems biology perspective Grant R Cramer, Kaoru Urano, Serge Delrot, Mario Pezzotti, Kazuo Shinozaki BMC Plant Biology 2011, 11:163 (17 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Grant Cramer and colleagues review the role of systems biology in the study of plant responses to abiotic stresses and discuss the future directions for research in this area.
		Research article DOF-binding sites additively contribute to guard cell-specificity of AtMYB60 promoter Eleonora Cominelli, Massimo Galbiati, Alessandra Albertini, Fabio Fornara, Lucio Conti, George Coupland, Chiara Tonelli BMC Plant Biology 2011, 11:162 (16 November 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article Characterization of highly efficient heavy-ion mutagenesis in Arabidopsis thaliana Yusuke Kazama, Tomonari Hirano, Hiroyuki Saito, Yang Liu, Sumie Ohbu, Yoriko Hayashi, Tomoko Abe BMC Plant Biology 2011, 11:161 (15 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article A pair of orthologs of a leucine-rich repeat receptor kinase-like disease resistance gene family regulates rice response to raised temperature Haitao Zhang, Yinglong Cao, Jing Zhao, Xianghua Li, Jinghua Xiao, Shiping Wang BMC Plant Biology 2011, 11:160 (15 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Orthologs of the rice Xa3/Xa26 disease-resistance gene are transcriptionally induced at raised temperatures, leading to the formation of temperature-sensitive lesions, suggesting their involvement in rice temperature sensing rather than resistance to Xanthomonas sp. infection.
		Research article Fortunella margarita Transcriptional Reprogramming Triggered by Xanthomonas citri subsp. citri Abeer A Khalaf, Frederick G Gmitter, Ana Conesa, Joaquin Dopazo, Gloria A Moore BMC Plant Biology 2011, 11:159 (11 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Identification and analysis of phosphorylation status of proteins in dormant terminal buds of poplar Chang-Cai Liu, Chang-Fu Liu, Hong-Xia Wang, Zhi-Ying Shen, Chuan-Ping Yang, Zhi-Gang Wei BMC Plant Biology 2011, 11:158 (11 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Conservation and loss of ribosomal RNA gene sites in diploid and polyploid Fragaria (Rosaceae) Bo Liu, Thomas M Davis BMC Plant Biology 2011, 11:157 (10 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article High resolution melting analysis for the detection of EMS induced mutations in wheat SbeIIa genes Ermelinda Botticella, Francesco Sestili, Antonio Hernandez-Lopez, Andrew Phillips, Domenico Lafiandra BMC Plant Biology 2011, 11:156 (10 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Loss-of-function mutations affecting a specific Glycine max R2R3 MYB transcription factor result in brown hilum and brown seed coats Jason D Gillman, Ashley Tetlow, Jeong-Deong Lee, J Shannon, Kristin Bilyeu BMC Plant Biology 2011, 11:155 (9 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Chemical and transcriptional responses of Norway spruce genotypes with different susceptibility to Heterobasidion spp. infection Marie Danielsson, Karl Lundén, Malin Elfstrand, Jiang Hu, Tao Zhao, Jenny Arnerup, Katarina Ihrmark, Gunilla Swedjemark, Anna-Karin Borg-Karlson, Jan Stenlid BMC Plant Biology 2011, 11:154 (8 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article A 48 SNP set for grapevine cultivar identification José A Cabezas, Javier Ibáñez, Diego Lijavetzky, Dolores Vélez, Gema Bravo, Virginia Rodríguez, Iván Carreño, Angelica M Jermakow, Juan Carreño, Leonor Ruiz-García, Mark R Thomas, José M Martinez-Zapater BMC Plant Biology 2011, 11:153 (8 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Genetic variation of γ-tocopherol methyltransferase gene contributes to elevated α-tocopherol content in soybean seeds Maria S Dwiyanti, Tetsuya Yamada, Masako Sato, Jun Abe, Keisuke Kitamura BMC Plant Biology 2011, 11:152 (7 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article A highly conserved NB-LRR encoding gene cluster effective against Setosphaeria turcica in sorghum Tom Martin, Moses Biruma, Ingela Fridborg, Patrick Okori, Christina Dixelius BMC Plant Biology 2011, 11:151 (3 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Whole-Organ analysis of calcium behaviour in the developing pistil of olive (Olea europaea L.) as a tool for the determination of key events in sexual plant reproduction Krzysztof Zienkiewicz, Juan D Rejón, Cynthia Suárez, Antonio J Castro, Juan de Dios Alché, María Rodríguez García BMC Plant Biology 2011, 11:150 (3 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Transcript and metabolite analysis in Trincadeira cultivar reveals novel information regarding the dynamics of grape ripening Ana M Fortes, Patricia Agudelo-Romero, Marta S Silva, Kashif Ali, Lisete Sousa, Federica Maltese, Young H Choi, Jerome Grimplet, José M Martinez- Zapater, Robert Verpoorte, Maria S Pais BMC Plant Biology 2011, 11:149 (2 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Methodology article Multiallelic epistatic model for an out-bred cross and mapping algorithm of interactive quantitative trait loci Chunfa Tong, Bo Zhang, Zhong Wang, Meng Xu, Xiaoming Pang, Jingna Si, Minren Huang, Rongling Wu BMC Plant Biology 2011, 11:148 (31 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Identification, utilisation and mapping of novel transcriptome-based markers from blackcurrant (Ribes nigrum) Joanne R Russell, Micha Bayer, Clare Booth, Linda Cardle, Christine A Hackett, Pete E Hedley, Linzi Jorgensen, Jenny A Morris, Rex M Brennan BMC Plant Biology 2011, 11:147 (28 October 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Association analysis of frost tolerance in rye using candidate genes and phenotypic data from controlled, semi-controlled, and field phenotyping platforms Yongle Li, Andreas Böck, Grit Haseneyer, Viktor Korzun, Peer Wilde, Chris-Carolin Schön, Donna P Ankerst, Eva Bauer BMC Plant Biology 2011, 11:146 (27 October 2011) Abstract \| Full text \| PDF \| PubMed