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Proteomics

This section covers all aspects of high-throughput proteomics, experimental and analytical approaches to proteome analysis, mass spectrometry, and also metabolomics.

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11.

Research article   Open Access Highly Accessed

Combining proteomics and transcriptome sequencing to identify active plant-cell-wall-degrading enzymes in a leaf beetle

Roy Kirsch, Natalie Wielsch, Heiko Vogel, Aleš Svatoš, David G Heckel, Yannick Pauchet BMC Genomics 2012, 13:587 (1 November 2012)

Abstract | Full text | PDF | PubMed

12.

Research article   Open Access Highly Accessed

Proteome remodelling during development from blood to insect-form Trypanosoma brucei quantified by SILAC and mass spectrometry

Kapila Gunasekera, Daniel Wüthrich, Sophie Braga-Lagache, Manfred Heller, Torsten Ochsenreiter BMC Genomics 2012, 13:556 (16 October 2012)

Abstract | Full text | PDF | PubMed

13.

Research article   Open Access

Remodeling of central metabolism in invasive breast cancer compared to normal breast tissue – a GC-TOFMS based metabolomics study

Jan Budczies, Carsten Denkert, Berit M Müller, Scarlet F Brockmöller, Frederick Klauschen, Balazs Györffy, Manfred Dietel, Christiane Richter-Ehrenstein, Ulrike Marten, Reza M Salek, Julian L Griffin, Mika Hilvo, Matej Orešič, Gert Wohlgemuth, Oliver Fiehn BMC Genomics 2012, 13:334 (23 July 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

14.

Research article   Open Access Highly Accessed

Metabolic classification of microbial genomes using functional probes

Chi-Ching Lee, Wei-Cheng Lo, Szu-Ming Lai, Yi-Ping Chen, Chuan Tang, Ping-Chiang Lyu BMC Genomics 2012, 13:157 (27 April 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

15.

Research article   Open Access Highly Accessed

High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade

Joseph A Christie-Oleza, Guylaine Miotello, Jean Armengaud BMC Genomics 2012, 13:73 (15 February 2012)

Abstract | Full text | PDF | PubMed

16.

Research article   Open Access Highly Accessed

Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis

Marie Couturier, David Navarro, Caroline Olivé, Didier Chevret, Mireille Haon, Anne Favel, Laurence Lesage-Meessen, Bernard Henrissat, Pedro M Coutinho, Jean-Guy Berrin BMC Genomics 2012, 13:57 (2 February 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

17.

Research article   Open Access Highly Accessed

A metabolomic strategy defines the regulation of lipid content and global metabolism by Δ9 desaturases in Caenorhabditis elegans

Cecilia Castro, Funda Sar, W Robert Shaw, Masanori Mishima, Eric A Miska, Julian L Griffin BMC Genomics 2012, 13:36 (20 January 2012)

Abstract | Full text | PDF | PubMed

18.

Research article   Open Access

Proteomic analysis of endothelial cold-adaptation

Michael AJ Zieger, Mahesh P Gupta, Mu Wang BMC Genomics 2011, 12:630 (22 December 2011)

Abstract | Full text | PDF | PubMed

19.

Research article   Open Access

A proteogenomic analysis of Shigella flexneri using 2D LC-MALDI TOF/TOF

Lina Zhao, Liguo Liu, Wenchuan Leng, Candong Wei, Qi Jin BMC Genomics 2011, 12:528 (28 October 2011)

Abstract | Full text | PDF | PubMed

20.

Research article   Open Access

Proteomic and biochemical analyses reveal the activation of unfolded protein response, ERK-1/2 and ribosomal protein S6 signaling in experimental autoimmune myocarditis rat model

Joo Chung, Hee Choi, Soo Kim, Kwan Hong, Soo Min, Myung Nam, Chan Kim, Young Ho Koh, Jong Seo BMC Genomics 2011, 12:520 (20 October 2011)

Abstract | Full text | PDF | PubMed

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