BMC Genomics | Search results for: RNA seq All words All fields (full text)

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644 item(s) found for: RNA seq (All words) in All fields (full text)

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	1.	Research article RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation Sandra Wiegand, Sascha Dietrich, Robert Hertel, Johannes Bongaerts, Stefan Evers, Sonja Volland, Rolf Daniel, Heiko Liesegang BMC Genomics 2013, 14:667 (1 October 2013) Abstract \| Provisional PDF
	2.	Research article Transcriptome sequencing and whole genome expression profiling of chrysanthemum under dehydration stress Yanjie Xu, Shan Gao, Yingjie Yang, Mingyun Huang, Lina Cheng, Qian Wei, Zhangjun Fei, Junping Gao, Bo Hong BMC Genomics 2013, 14:662 (28 September 2013) Abstract \| Full text \| PDF \| PubMed
	3.	Research article RIP-seq of BmAgo2-associated small RNAs reveal various types of small non-coding RNAs in the silkworm, Bombyx mori Zuoming Nie, Fang Zhou, Dan Li, Zhengbing Lv, Jian Chen, Yue Liu, Jianhong Shu, Qing Sheng, Wei Yu, Wenping Zhang, Caiying Jiang, Yuhua Yao, Juming Yao, Yongfeng Jin, Yaozhou Zhang BMC Genomics 2013, 14:661 (28 September 2013) Abstract \| Full text \| PDF \| PubMed
	4.	Research article Male-specific fruitless isoforms have different regulatory roles conferred by distinct zinc finger DNA binding domains Justin E Dalton, Justin M Fear, Simon Knott, Bruce S Baker, Lauren M McIntyre, Michelle N Arbeitman BMC Genomics 2013, 14:659 (27 September 2013) Abstract \| Provisional PDF \| PubMed
	5.	Research article FGF2-induced effects on transcriptome associated with regeneration competence in adult human fibroblasts Olga Kashpur, David LaPointe, Sakthikumar Ambady, Elizabeth F Ryder, Tanja Dominko BMC Genomics 2013, 14:656 (26 September 2013) Abstract \| Full text \| PDF \| PubMed
	6.	Methodology article HANDS: a tool for genome-wide discovery of subgenome-specific base-identity in polyploids Aziz Mithani, Eric J Belfield, Carly Brown, Caifu Jiang, Lindsey J Leach, Nicholas P Harberd BMC Genomics 2013, 14:653 (24 September 2013) Abstract \| Full text \| PDF \| PubMed
	7.	Methodology article Computational prediction of associations between long non-coding RNAs and proteins Qiongshi Lu, Sijin Ren, Ming Lu, Yong Zhang, Dahai Zhu, Xuegong Zhang, Tingting Li BMC Genomics 2013, 14:651 (24 September 2013) Abstract \| Provisional PDF \| PubMed
	8.	Research article Comparative methylomics between domesticated and wild silkworms implies possible epigenetic influences on silkworm domestication Hui Xiang, Xin Li, Fangyin Dai, Xun Xu, Anjiang Tan, Lei Chen, Guojie Zhang, Yun Ding, Qiye Li, Jinmin Lian, Andrew Willden, Qiuhong Guo, Qingyou Xia, Jun Wang, Wen Wang BMC Genomics 2013, 14:646 (23 September 2013) Abstract \| Provisional PDF \| PubMed
	9.	Research article Maximum parsimony xor haplotyping by sparse dictionary selection Abdulkadir Elmas, Guido H Jajamovich, Xiaodong Wang BMC Genomics 2013, 14:645 (23 September 2013) Abstract \| Provisional PDF \| PubMed
	10.	Research article Extensively duplicated and transcriptionally active recent lateral gene transfer from a bacterial Wolbachia endosymbiont to its host filarial nematode Brugia malayi Panagiotis Ioannidis, Kelly L Johnston, David R Riley, Nikhil Kumar, James R White, Karen T Olarte, Sandra Ott, Luke J Tallon, Jeremy M Foster, Mark J Taylor, Julie C Dunning Hotopp BMC Genomics 2013, 14:639 (22 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	11.	Correspondence "Non-canonical protein-DNA interactions identified by ChIP are not artifacts": response Daniel Schindler, Torsten Waldminghaus BMC Genomics 2013, 14:638 (22 September 2013) Abstract \| Provisional PDF \| PubMed
	12.	Research article *Transcriptome profiling of Gossypium barbadense* inoculated with Verticillium dahliae provides a resource for cotton improvement** Yan Zhang, Xing Wang, Ze Ding, Qing Ma, Gui Zhang, Shu Zhang, Zhi Li, Li Wu, Gui Zhang, Zhi Ma BMC Genomics 2013, 14:637 (22 September 2013) Abstract \| Full text \| PDF \| PubMed
	13.	Research article Model of gene expression in extreme cold - reference transcriptome for the high-Antarctic cryopelagic notothenioid fish Pagothenia borchgrevinki Kevin T Bilyk, C-H Cheng BMC Genomics 2013, 14:634 (21 September 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Comparative transcriptome analysis of the Antarctic fish P. Borchgrevinki, identifies genes involved in cold adaptation and provides insight into the evolution of molecular mechanisms for fish survival in different water temperatures - an important feature during climate change.
	14.	Research article An expression atlas of human primary cells: inference of gene function from coexpression networks Neil A Mabbott, J Baillie, Helen Brown, Tom C Freeman, David A Hume BMC Genomics 2013, 14:632 (20 September 2013) Abstract \| Full text \| PDF \| PubMed
	15.	Research article *BSTA: a targeted approach combines bulked segregant analysis with next- generation sequencing and de novo* transcriptome assembly for SNP discovery in sunflower** Maren Livaja, Yu Wang, Silke Wieckhorst, Grit Haseneyer, Michael Seidel, Volker Hahn, Steven J Knapp, Stefan Taudien, Chris-Carolin Schön, Eva Bauer BMC Genomics 2013, 14:628 (17 September 2013) Abstract \| Full text \| PDF
	16.	Research article Integrative genomic and functional profiling of the pancreatic cancer genome A Shain, Keyan Salari, Craig P Giacomini, Jonathan R Pollack BMC Genomics 2013, 14:624 (16 September 2013) Abstract \| Full text \| PDF \| PubMed
	17.	Research article A combination of improved differential and global RNA-seq reveals pervasive transcription initiation and events in all stages of the life-cycle of functional RNAs in Propionibacterium acnes, a major contributor to wide-spread human disease Yu-fei Lin, David A, Shuang Guan, Lira Mamanova, Kenneth J McDowall BMC Genomics 2013, 14:620 (14 September 2013) Abstract \| Full text \| PDF \| PubMed
	18.	Research article Transcriptome profiling reveals links between ParS/ParR, MexEF-OprN, and quorum sensing in the regulation of adaptation and virulence in Pseudomonas aeruginosa Dongping Wang, Candace Seeve, Leland S Pierson, Elizabeth A Pierson BMC Genomics 2013, 14:618 (13 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	19.	Research article *Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent* Janja Zajc, Yongfeng Liu, Wenkui Dai, Zhenyu Yang, Jingzhi Hu, Cene Gostinčar, Nina Gunde-Cimerman BMC Genomics 2013, 14:617 (13 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	20.	Research article Parallel evolution of genome structure and transcriptional landscape in the Epsilonproteobacteria Ida Porcelli, Mark Reuter, Bruce M Pearson, Thomas Wilhelm, Arnoud HM van Vliet BMC Genomics 2013, 14:616 (12 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	21.	Research article Distinct polyadenylation landscapes of diverse human tissues revealed by a modified PA-seq strategy Ting Ni, Yanqin Yang, Dina Hafez, Wenjing Yang, Kurtis Kiesewetter, Yoshi Wakabayashi, Uwe Ohler, Weiqun Peng, Jun Zhu BMC Genomics 2013, 14:615 (11 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	22.	Research article *Analysis of Phakopsora pachyrhizi* transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing** Arianne Tremblay, Parsa Hosseini, Shuxian Li, Nadim W Alkharouf, Benjamin F Matthews BMC Genomics 2013, 14:614 (11 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	23.	Research article Transcriptome analysis of two buffalograss cultivars Michael Wachholtz, Tiffany Heng-Moss, Paul Twigg, Lisa Baird, Guoqing Lu, Keenan Amundsen BMC Genomics 2013, 14:613 (11 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	24.	Research article Transcriptomic characterization of cold acclimation in larval zebrafish Yong Long, Guili Song, Junjun Yan, Xiaozhen He, Qing Li, Zongbin Cui BMC Genomics 2013, 14:612 (11 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
	25.	Research article Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species Hua Bao, Arun Kommadath, Xu Sun, Yan Meng, Adriano S Arantes, Graham S Plastow, Le Guan, Paul Stothard BMC Genomics 2013, 14:609 (10 September 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed

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