BMC Genomics | Search results for: RNA seq All words All fields (full text)

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558 item(s) found for: RNA seq (All words) in All fields (full text)

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	1.	Research article Comparative transcriptomics of early dipteran development Eva Jiménez-Guri, Jaime Huerta-Cepas, Luca Cozzuto, Karl R Wotton, Hui Kang, Heinz Himmelbauer, Guglielmo Roma, Toni Gabaldón, Johannes Jaeger BMC Genomics 2013, 14:123 (24 February 2013) Abstract \| Provisional PDF \| PubMed
	2.	Research article Systematic analysis of palatal transcriptome to identify cleft palate genes within TGFbeta3-knockout mice alleles: RNA-Seq analysis of TGFbeta3 Mice Ferhat Ozturk, You Li, Xiujuan Zhu, Chittibabu Guda, Ali Nawshad BMC Genomics 2013, 14:113 (20 February 2013) Abstract \| Provisional PDF \| PubMed
	3.	Research iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data Kun Sun, Xiaona Chen, Peiyong Jiang, Xiaofeng Song, Huating Wang, Hao Sun BMC Genomics 2013, 14(Suppl 2):S7 (15 February 2013) Abstract \| Full text \| PDF
	4.	Research Multiclass relevance units machine: benchmark evaluation and application to small ncRNA discovery Mark Menor, Kyungim Baek, Guylaine Poisson BMC Genomics 2013, 14(Suppl 2):S6 (15 February 2013) Abstract \| Full text \| PDF
	5.	Research miRNA-target prediction based on transcriptional regulation Toyofumi Fujiwara, Tetsushi Yada BMC Genomics 2013, 14(Suppl 2):S3 (15 February 2013) Abstract \| Full text \| PDF
	6.	Methodology article Genotyping 1000 yeast strains by next-generation sequencing Stefan Wilkening, Manu M Tekkedil, Gen Lin, Emilie S Fritsch, Wu Wei, Julien Gagneur, David W Lazinski, Andrew Camilli, Lars M Steinmetz BMC Genomics 2013, 14:90 (9 February 2013) Abstract \| Full text \| PDF \| PubMed
	7.	Research article Analysis of the leaf transcriptome of Musa acuminata during interaction with Mycosphaerella musicola: gene assembly, annotation and marker development Marco A Passos, Viviane Oliveira de Cruz, Flavia L Emediato, Cristiane Camargo de Teixeira, Vânia C Azevedo, Ana C Brasileiro, Edson P Amorim, Claudia F Ferreira, Natalia F Martins, Roberto C Togawa, Georgios J Pappas, Orzenil Bonfim da Silva, Robert NG Miller BMC Genomics 2013, 14:78 (5 February 2013) Abstract \| Provisional PDF \| PubMed
	8.	Research article Characterisation of the wheat (triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat Youko Oono, Fuminori Kobayashi, Yoshihiro Kawahara, Takayuki Yazawa, Hirokazu Handa, Takeshi Itoh, Takashi Matsumoto BMC Genomics 2013, 14:77 (4 February 2013) Abstract \| Provisional PDF \| PubMed
	9.	Research article Draft genome sequence of the rubber tree Hevea brasiliensis Ahmad Yamin Abdul Rahman, Abhilash O Usharraj, Biswapriya B Misra, Gincy P Thottathil, Kandakumar Jayasekaran, Yun Feng, Shaobin Hou, Su Yean Ong, Fui Ling Ng, Ling Sze Lee, Hock Siew Tan, Muhd Khairul Luqman Muhd Sakaff, Beng Soon Teh, Bee Khoo, Siti Suriawati Badai, Nurohaida Ab Aziz, Anton Yuryev, Bjarne Knudsen, Alexandre Dionne-Laporte, Nokuthula P Mchunu, Qingyi Yu, Brennick J Langston, Tracey Allen K Freitas, Aaron G Young, Rui Chen, Lei Wang, Nazalan Najimudin, Jennifer A Saito, Maqsudul Alam BMC Genomics 2013, 14:75 (2 February 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The draft genome of the rubber tree Hevea brasiliensis is almost 80% repetitive DNA with 12.7% of genes models identified being unique to this species, including key rubber biosynthesis and disease resistance genes
	10.	Research article Comparison of class 2 transposable elements at superfamily resolution reveals conserved and distinct features in cereal grass genomes Yujun Han, Shanshan Qin, Susan R Wessler BMC Genomics 2013, 14:71 (31 January 2013) Abstract \| Full text \| PDF \| PubMed
	11.	Research article Genome-wide identification, characterization, and expression analysis of lineage-specific genes within zebrafish Liandong Yang, Ming Zou, Beide Fu, Shunping He BMC Genomics 2013, 14:65 (31 January 2013) Abstract \| Provisional PDF \| PubMed
	12.	Research article Genome-wide analysis of histone modifiers in tomato: gaining an insight into their developmental roles Riccardo Aiese Cigliano, Walter Sanseverino, Gaetana Cremona, Maria R Ercolano, Clara Conicella, Federica M Consiglio BMC Genomics 2013, 14:57 (28 January 2013) Abstract \| Full text \| PDF \| PubMed
	13.	Research article Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes Walter L Eckalbar, Elizabeth D Hutchins, Glenn J Markov, April N Allen, Jason J Corneveaux, Kerstin Lindblad-Toh, Federica Di Palma, Jessica Alföldi, Matthew J Huentelman, Kenro Kusumi BMC Genomics 2013, 14:49 (23 January 2013) Abstract \| Full text \| PDF \| PubMed
	14.	Proceedings Inferring evolution of gene duplicates using probabilistic models and nonparametric belief propagation Jia Zeng, Sridhar Hannenhalli BMC Genomics 2013, 14(Suppl 1):S15 (21 January 2013) Abstract \| Full text \| PDF \| PubMed
	15.	Proceedings Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information Ellis Patrick, Michael Buckley, David Lin, Yee Yang BMC Genomics 2013, 14(Suppl 1):S9 (21 January 2013) Abstract \| Full text \| PDF \| PubMed
	16.	Proceedings A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing Chih-Hung Chou, Feng-Mao Lin, Min-Te Chou, Sheng-Da Hsu, Tzu-Hao Chang, Shun-Long Weng, Sirjana Shrestha, Chiung-Chih Hsiao, Jui-Hung Hung, Hsien-Da Huang BMC Genomics 2013, 14(Suppl 1):S2 (21 January 2013) Abstract \| Full text \| PDF \| PubMed
	17.	Database In silico mining of putative microsatellite markers from whole genome sequence of water buffalo (Bubalus bubalis) and development of first BuffSatDB Sarika, Vasu Arora, Mir Iquebal, Anil Rai, Dinesh Kumar BMC Genomics 2013, 14:43 (19 January 2013) Abstract \| Full text \| PDF \| PubMed
	18.	Research article De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity Luca Venturini, Alberto Ferrarini, Sara Zenoni, Giovanni Battista Tornielli, Marianna Fasoli, Silvia Dal Santo, Andrea Minio, Genny Buson, Paola Tononi, Elisa Debora Zago, Gianpiero Zamperin, Diana Bellin, Mario Pezzotti, Massimo Delledonne BMC Genomics 2013, 14:41 (18 January 2013) Abstract \| Full text \| PDF \| PubMed
	19.	Research article Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq Chad E Niederhuth, O Rahul Patharkar, John C Walker BMC Genomics 2013, 14:37 (17 January 2013) Abstract \| Full text \| PDF \| PubMed
	20.	Research article Comparative gene expression between two yeast species Yuanfang Guan, Maitreya J Dunham, Olga G Troyanskaya, Amy A Caudy BMC Genomics 2013, 14:33 (16 January 2013) Abstract \| Full text \| PDF \| PubMed
	21.	Research article Transcriptomic profiling of the salt-stress response in the wild recretohalophyte Reaumuria trigyna Zhen-hua Dang, Lin-lin Zheng, Jia Wang, Zhe Gao, Shu-biao Wu, Zhi Qi, Ying-chun Wang BMC Genomics 2013, 14:29 (16 January 2013) Abstract \| Full text \| PDF \| PubMed
	22.	Research article Transcriptome profile analysis of young floral buds of fertile and sterile plants from the self-pollinated offspring of the hybrid between novel restorer line NR1 and Nsa CMS line in Brassica napus Xiaohong Yan, Caihua Dong, Jingyin Yu, Wanghui Liu, Chenghong Jiang, Jia Liu, Qiong Hu, Xiaoping Fang, Wenhui Wei BMC Genomics 2013, 14:26 (16 January 2013) Abstract \| Full text \| PDF \| PubMed
	23.	Research article Vasohibin-1 is identified as a master-regulator of endothelial cell apoptosis using gene network analysis Muna Affara, Debbie Sanders, Hiromitsu Araki, Yoshinori Tamada, Benjamin J Dunmore, Sally Humphreys, Seiya Imoto, Christopher Savoie, Satoru Miyano, Satoru Kuhara, David Jeffries, Cristin Print, D Stephen Charnock-Jones BMC Genomics 2013, 14:23 (16 January 2013) Abstract \| Full text \| PDF \| PubMed
	24.	Research article RNA-Seq analysis reveals new gene models and alternative splicing in the fungal pathogen Fusarium graminearum Chunzhao Zhao, Cees Waalwijk, Pierre J G M de Wit, Dingzhong Tang, Theo van der Lee BMC Genomics 2013, 14:21 (16 January 2013) Abstract \| Full text \| PDF \| PubMed
	25.	Research article Transcriptome analysis of rice root heterosis by RNA-Seq Rongrong Zhai, Yue Feng, Huimin Wang, Xiaodeng Zhan, Xihong Shen, Weiming Wu, Yingxin Zhang, Daibo Chen, Gaoxing Dai, Zhanlie Yang, Liyong Cao, Shihua Cheng BMC Genomics 2013, 14:19 (16 January 2013) Abstract \| Full text \| PDF \| PubMed

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