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		Research article The transcriptome of Leishmania major in the axenic promastigote stage: transcript annotation and relative expression levels by RNA-seq Alberto Rastrojo, Fernando Carrasco-Ramiro, Diana Martín, Antonio Crespillo, Rosa M Reguera, Begoña Aguado, Jose M Requena BMC Genomics 2013, 14:223 (4 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat Tatiana Belova, Bujie Zhan, Jonathan Wright, Mario Caccamo, Torben Asp, Hana Šimková, Matthew Kent, Christian Bendixen, Frank Panitz, Sigbjørn Lien, Jaroslav Doležel, Odd-Arne Olsen, Simen R Sandve BMC Genomics 2013, 14:222 (4 April 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article Rapid, scalable and highly automated HLA genotyping using next-generation sequencing: a transition from research to diagnostics Martin Danzer, Norbert Niklas, Stephanie Stabentheiner, Katja Hofer, Johannes Pröll, Christina Stückler, Edeltraud Raml, Helene Polin, Christian Gabriel BMC Genomics 2013, 14:221 (4 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Pig immune response to general stimulus and to porcine reproductive and respiratory syndrome virus infection: a meta-analysis approach Bouabid Badaoui, Christopher K Tuggle, Zhiliang Hu, James M Reecy, Tahar Ait-Ali, Anna Anselmo, Sara Botti BMC Genomics 2013, 14:220 (3 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Isolation and expression analysis of cDNAs that are associated with alternate bearing in Olea europaea L. cv. Ayvalık Ekrem Dündar, Öznur Suakar, Turgay Unver, Ayhan Dagdelen BMC Genomics 2013, 14:219 (3 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Extensive circadian and light regulation of the transcriptome in the malaria mosquito Anopheles gambiae Samuel SC Rund, James E Gentile, Giles E Duffield BMC Genomics 2013, 14:218 (3 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Identification of molecular processes needed for vascular formation through transcriptome analysis of different vascular systems Peng Xu, Yimeng Kong, Xuan Li, Laigeng Li BMC Genomics 2013, 14:217 (2 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article CAMTA 1 regulates drought responses in Arabidopsis thaliana Neha Pandey, Alok Ranjan, Poonam Pant, Rajiv K Tripathi, Farha Ateek, Haushilla P Pandey, Uday V Patre, Samir V Sawant BMC Genomics 2013, 14:216 (2 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Database TRACER: a resource to study the regulatory architecture of the mouse genome Chao-Kung Chen, Orsolya Symmons, Veli Vural Uslu, Taro Tsujimura, Sandra Ruf, Damian Smedley, François Spitz BMC Genomics 2013, 14:215 (2 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article RNA sequencing reveals small RNAs differentially expressed between incipient Japanese threespine sticklebacks Jun Kitano, Kohta Yoshida, Yutaka Suzuki BMC Genomics 2013, 14:214 (2 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Database RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes Michael J Cipriano, Pavel N Novichkov, Alexey E Kazakov, Dmitry A Rodionov, Adam P Arkin, Mikhail S Gelfand, Inna Dubchak BMC Genomics 2013, 14:213 (2 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Species and condition specific adaptation of the transcriptional landscapes in Candida albicans and Candida dubliniensis Christian Grumaz, Stefan Lorenz, Philip Stevens, Elena Lindemann, Ulrike Schöck, Julia Retey, Steffen Rupp, Kai Sohn BMC Genomics 2013, 14:212 (2 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools Veljo Kisand, Teresa Lettieri BMC Genomics 2013, 14:211 (1 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Genome-wide co-expression analysis predicts protein kinases as important regulators of phosphate deficiency-induced root hair remodeling in Arabidopsis Ping Lan, Wenfeng Li, Wolfgang Schmidt BMC Genomics 2013, 14:210 (1 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Software MGcV: the microbial genomic context viewer for comparative genome analysis Lex Overmars, Robert Kerkhoven, Roland J Siezen, Christof Francke BMC Genomics 2013, 14:209 (1 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Construction of a plant-transformation-competent BIBAC library and genome sequence analysis of polyploid Upland cotton (Gossypium hirsutum L.) Mi-Kyung Lee, Yang Zhang, Meiping Zhang, Mark Goebel, Hee Kim, Barbara A Triplett, David M Stelly, Hong-Bin Zhang BMC Genomics 2013, 14:208 (28 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Transcriptome analysis of the parasite Encephalitozoon cuniculi: an in-depth examination of pre-mRNA splicing in a reduced eukaryote Cameron J Grisdale, Lisa C Bowers, Elizabeth S Didier, Naomi M Fast BMC Genomics 2013, 14:207 (28 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Prediction of constitutive A-to-I editing sites from human transcriptomes in the absence of genomic sequences Shanshan Zhu, Jian-Feng Xiang, Tian Chen, Ling-Ling Chen, Li Yang BMC Genomics 2013, 14:206 (27 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Genes associated with the cis-regulatory functions of intragenic LINE-1 elements Wachiraporn Wanichnopparat, Kulachanya Suwanwongse, Piyapat Pin-on, Chatchawit Aporntewan, Apiwat Mutirangura BMC Genomics 2013, 14:205 (27 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article RNAseq versus genome-predicted transcriptomes: a large population of novel transcripts identified in an Illumina-454 Hydra transcriptome Yvan Wenger, Brigitte Galliot BMC Genomics 2013, 14:204 (25 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Patterns and evolution of ACGT repeat cis-element landscape across four plant genomes Rajesh Mehrotra, Sachin Sethi, Ipshita Zutshi, Purva Bhalothia, Sandhya Mehrotra BMC Genomics 2013, 14:203 (25 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article The genome and transcriptome of perennial ryegrass mitochondria Md Shofiqul Islam, Bruno Studer, Stephen L Byrne, Jacqueline D Farrell, Frank Panitz, Christian Bendixen, Ian Max Møller, Torben Asp BMC Genomics 2013, 14:202 (23 March 2013) Abstract \| Provisional PDF \| PubMed
		Research article Xylem transcription profiles indicate potential metabolic responses for economically relevant characteristics of Eucalyptus species Marcela Mendes Salazar, Leandro Costa Nascimento, Eduardo Leal Oliveira Camargo, Danieli Cristina Gonçalves, Jorge Lepikson Neto, Wesley Leoricy Marques, Paulo José Pereira Lima Teixeira, Piotr Mieczkowski, Jorge Maurício Costa Mondego, Marcelo Falsarella Carazzolle, Ana Carolina Deckmann, Gonçalo Amarante Guimarães Pereira BMC Genomics 2013, 14:201 (22 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Comparative genome analysis of Streptococcus infantarius subsp. infantarius CJ18, an African fermented camel milk isolate with adaptations to dairy environment Christoph Jans, Rainer Follador, Mira Hochstrasser, Christophe Lacroix, Leo Meile, Marc J A Stevens BMC Genomics 2013, 14:200 (22 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Intron retention and transcript chimerism conserved across mammals: Ly6g5b and Csnk2b-Ly6g5b as examples Francisco Hernández-Torres, Alberto Rastrojo, Begoña Aguado BMC Genomics 2013, 14:199 (22 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed

	All
		Research article The transcriptome of Leishmania major in the axenic promastigote stage: transcript annotation and relative expression levels by RNA-seq Alberto Rastrojo, Fernando Carrasco-Ramiro, Diana Martín, Antonio Crespillo, Rosa M Reguera, Begoña Aguado, Jose M Requena BMC Genomics 2013, 14:223 (4 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat Tatiana Belova, Bujie Zhan, Jonathan Wright, Mario Caccamo, Torben Asp, Hana Šimková, Matthew Kent, Christian Bendixen, Frank Panitz, Sigbjørn Lien, Jaroslav Doležel, Odd-Arne Olsen, Simen R Sandve BMC Genomics 2013, 14:222 (4 April 2013) Abstract \| Full text \| PDF \| PubMed
		Methodology article Rapid, scalable and highly automated HLA genotyping using next-generation sequencing: a transition from research to diagnostics Martin Danzer, Norbert Niklas, Stephanie Stabentheiner, Katja Hofer, Johannes Pröll, Christina Stückler, Edeltraud Raml, Helene Polin, Christian Gabriel BMC Genomics 2013, 14:221 (4 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Pig immune response to general stimulus and to porcine reproductive and respiratory syndrome virus infection: a meta-analysis approach Bouabid Badaoui, Christopher K Tuggle, Zhiliang Hu, James M Reecy, Tahar Ait-Ali, Anna Anselmo, Sara Botti BMC Genomics 2013, 14:220 (3 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Isolation and expression analysis of cDNAs that are associated with alternate bearing in Olea europaea L. cv. Ayvalık Ekrem Dündar, Öznur Suakar, Turgay Unver, Ayhan Dagdelen BMC Genomics 2013, 14:219 (3 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Extensive circadian and light regulation of the transcriptome in the malaria mosquito Anopheles gambiae Samuel SC Rund, James E Gentile, Giles E Duffield BMC Genomics 2013, 14:218 (3 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Identification of molecular processes needed for vascular formation through transcriptome analysis of different vascular systems Peng Xu, Yimeng Kong, Xuan Li, Laigeng Li BMC Genomics 2013, 14:217 (2 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article CAMTA 1 regulates drought responses in Arabidopsis thaliana Neha Pandey, Alok Ranjan, Poonam Pant, Rajiv K Tripathi, Farha Ateek, Haushilla P Pandey, Uday V Patre, Samir V Sawant BMC Genomics 2013, 14:216 (2 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Database TRACER: a resource to study the regulatory architecture of the mouse genome Chao-Kung Chen, Orsolya Symmons, Veli Vural Uslu, Taro Tsujimura, Sandra Ruf, Damian Smedley, François Spitz BMC Genomics 2013, 14:215 (2 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article RNA sequencing reveals small RNAs differentially expressed between incipient Japanese threespine sticklebacks Jun Kitano, Kohta Yoshida, Yutaka Suzuki BMC Genomics 2013, 14:214 (2 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Database RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes Michael J Cipriano, Pavel N Novichkov, Alexey E Kazakov, Dmitry A Rodionov, Adam P Arkin, Mikhail S Gelfand, Inna Dubchak BMC Genomics 2013, 14:213 (2 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Species and condition specific adaptation of the transcriptional landscapes in Candida albicans and Candida dubliniensis Christian Grumaz, Stefan Lorenz, Philip Stevens, Elena Lindemann, Ulrike Schöck, Julia Retey, Steffen Rupp, Kai Sohn BMC Genomics 2013, 14:212 (2 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools Veljo Kisand, Teresa Lettieri BMC Genomics 2013, 14:211 (1 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Genome-wide co-expression analysis predicts protein kinases as important regulators of phosphate deficiency-induced root hair remodeling in Arabidopsis Ping Lan, Wenfeng Li, Wolfgang Schmidt BMC Genomics 2013, 14:210 (1 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Software MGcV: the microbial genomic context viewer for comparative genome analysis Lex Overmars, Robert Kerkhoven, Roland J Siezen, Christof Francke BMC Genomics 2013, 14:209 (1 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Construction of a plant-transformation-competent BIBAC library and genome sequence analysis of polyploid Upland cotton (Gossypium hirsutum L.) Mi-Kyung Lee, Yang Zhang, Meiping Zhang, Mark Goebel, Hee Kim, Barbara A Triplett, David M Stelly, Hong-Bin Zhang BMC Genomics 2013, 14:208 (28 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Transcriptome analysis of the parasite Encephalitozoon cuniculi: an in-depth examination of pre-mRNA splicing in a reduced eukaryote Cameron J Grisdale, Lisa C Bowers, Elizabeth S Didier, Naomi M Fast BMC Genomics 2013, 14:207 (28 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Prediction of constitutive A-to-I editing sites from human transcriptomes in the absence of genomic sequences Shanshan Zhu, Jian-Feng Xiang, Tian Chen, Ling-Ling Chen, Li Yang BMC Genomics 2013, 14:206 (27 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Genes associated with the cis-regulatory functions of intragenic LINE-1 elements Wachiraporn Wanichnopparat, Kulachanya Suwanwongse, Piyapat Pin-on, Chatchawit Aporntewan, Apiwat Mutirangura BMC Genomics 2013, 14:205 (27 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article RNAseq versus genome-predicted transcriptomes: a large population of novel transcripts identified in an Illumina-454 Hydra transcriptome Yvan Wenger, Brigitte Galliot BMC Genomics 2013, 14:204 (25 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Patterns and evolution of ACGT repeat cis-element landscape across four plant genomes Rajesh Mehrotra, Sachin Sethi, Ipshita Zutshi, Purva Bhalothia, Sandhya Mehrotra BMC Genomics 2013, 14:203 (25 March 2013) Abstract \| Full text \| PDF \| PubMed
		Research article The genome and transcriptome of perennial ryegrass mitochondria Md Shofiqul Islam, Bruno Studer, Stephen L Byrne, Jacqueline D Farrell, Frank Panitz, Christian Bendixen, Ian Max Møller, Torben Asp BMC Genomics 2013, 14:202 (23 March 2013) Abstract \| Provisional PDF \| PubMed
		Research article Xylem transcription profiles indicate potential metabolic responses for economically relevant characteristics of Eucalyptus species Marcela Mendes Salazar, Leandro Costa Nascimento, Eduardo Leal Oliveira Camargo, Danieli Cristina Gonçalves, Jorge Lepikson Neto, Wesley Leoricy Marques, Paulo José Pereira Lima Teixeira, Piotr Mieczkowski, Jorge Maurício Costa Mondego, Marcelo Falsarella Carazzolle, Ana Carolina Deckmann, Gonçalo Amarante Guimarães Pereira BMC Genomics 2013, 14:201 (22 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Comparative genome analysis of Streptococcus infantarius subsp. infantarius CJ18, an African fermented camel milk isolate with adaptations to dairy environment Christoph Jans, Rainer Follador, Mira Hochstrasser, Christophe Lacroix, Leo Meile, Marc J A Stevens BMC Genomics 2013, 14:200 (22 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Intron retention and transcript chimerism conserved across mammals: Ly6g5b and Csnk2b-Ly6g5b as examples Francisco Hernández-Torres, Alberto Rastrojo, Begoña Aguado BMC Genomics 2013, 14:199 (22 March 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed