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		Methodology article Simultaneous miRNA and mRNA transcriptome profiling of human myoblasts reveals a novel set of myogenic differentiation-associated miRNAs and their target genes Petr Dmitriev, Ana Barat, Anna Polesskaya, Mary J O’Connell, Thomas Robert, Philippe Dessen, Thomas A Walsh, Vladimir Lazar, Ahmed Turki, Gilles Carnac, Dalila Laoudj-Chenivesse, Marc Lipinski, Yegor S Vassetzky BMC Genomics 2013, 14:265 (18 April 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Dynamic recruitment of microRNAs to their mRNA targets in the regenerating liver Jonathan Schug, Lindsay B McKenna, Gabriel Walton, Nicholas Hand, Sarmistha Mukherjee, Kow Essuman, Zhongjie Shi, Yan Gao, Karen Markley, Momo Nakagawa, Vasumathi Kameswaran, Anastassios Vourekas, Joshua R Friedman, Klaus H Kaestner, Linda E Greenbaum BMC Genomics 2013, 14:264 (18 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogeny Shi-Hui Niu, Zhe-Xin Li, Hu-Wei Yuan, Xiao-Yang Chen, Yue Li, Wei Li BMC Genomics 2013, 14:263 (18 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Copy number variants in locally raised Chinese chicken genomes determined using array comparative genomic hybridization Ming Tian, Yanqiang Wang, Xiaorong Gu, Chungang Feng, Suyun Fang, Xiaoxiang Hu, Ning Li BMC Genomics 2013, 14:262 (17 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Worldwide population distribution of the common LCE3C-LCE3B deletion associated with psoriasis and other autoimmune disorders Laia Bassaganyas, Eva Riveira-Muñoz, Manel García-Aragonés, Juan R González, Mario Cáceres, Lluís Armengol, Xavier Estivill BMC Genomics 2013, 14:261 (17 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Expression of concern Expression of concern: subfunctionalization reduces the fitness cost of gene duplication in humans by buffering dosage imbalances Maria K Kowalczuk, Shreeya Nanda, Elizabeth C Moylan BMC Genomics 2013, 14:260 (17 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Transcriptional basis of the acclimation to high environmental temperature at the olfactory receptor organs of Drosophila melanogaster Jacob Riveron, Tamara Boto, Esther Alcorta BMC Genomics 2013, 14:259 (17 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on the ENCODE array Charles Vadnais, Arif A Awan, Ryoko Harada, Pier-Luc Clermont, Lam Leduy, Ginette Bérubé, Alain Nepveu BMC Genomics 2013, 14:258 (16 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Improving mammalian genome scaffolding using large insert mate-pair next-generation sequencing Sebastiaan van Heesch, Wigard P Kloosterman, Nico Lansu, Frans-Paul Ruzius, Elizabeth Levandowsky, Clarence C Lee, Shiguo Zhou, Steve Goldstein, David C Schwartz, Timothy T Harkins, Victor Guryev, Edwin Cuppen BMC Genomics 2013, 14:257 (16 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Changes in the transcriptome of the malaria parasite Plasmodium falciparum during the initial phase of transmission from the human to the mosquito Che Julius Ngwa, Matthias Scheuermayer, Gunnar Rudolf Mair, Selina Kern, Thomas Brügl, Christine Clara Wirth, Makoah Nigel Aminake, Jochen Wiesner, Rainer Fischer, Andreas Vilcinskas, Gabriele Pradel BMC Genomics 2013, 14:256 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article A zebrafish high throughput screening system used for Staphylococcus epidermidis infection marker discovery Wouter J Veneman, Oliver W Stockhammer, Leonie de Boer, Sebastian A J Zaat, Annemarie H Meijer, Herman P Spaink BMC Genomics 2013, 14:255 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Correspondence Non-canonical protein-DNA interactions identified by ChIP are not artifacts Richard P Bonocora, Devon M Fitzgerald, Anne M Stringer, Joseph T Wade BMC Genomics 2013, 14:254 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Massively-parallel sequencing of genes on a single chromosome: a comparison of solution hybrid selection and flow sorting Jamie K Teer, Jennifer J Johnston, Sarah L Anzick, Marbin Pineda, Gary Stone, NISC Comparative Sequencing Program1, Paul S Meltzer, James C Mullikin, Leslie G Biesecker BMC Genomics 2013, 14:253 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Reductive evolution in Streptococcus agalactiae and the emergence of a host adapted lineage Isabelle Rosinski-Chupin, Elisabeth Sauvage, Barbara Mairey, Sophie Mangenot, Laurence Ma, Violette Da Cunha, Christophe Rusniok, Christiane Bouchier, Valérie Barbe, Philippe Glaser BMC Genomics 2013, 14:252 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article A multistep genomic screen identifies new genes required for repair of DNA double-strand breaks in Saccharomyces cerevisiae Jennifer Summers McKinney, Sunaina Sethi, Jennifer DeMars Tripp, Thuy N Nguyen, Brian A Sanderson, James W Westmoreland, Michael A Resnick, L Kevin Lewis BMC Genomics 2013, 14:251 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea Zahra-Katy Navabi, Terry Huebert, Andrew G Sharpe, Carmel M O¿Neill, Ian Bancroft, Isobel AP Parkin BMC Genomics 2013, 14:250 (15 April 2013) Abstract \| Provisional PDF \| PubMed
		Research article The significance of alternative transcripts for Caenorhabditis elegans transcription factor genes, based on expression pattern analysis Hannah L Craig, Julia Wirtz, Sophie Bamps, Colin T Dolphin, Ian A Hope BMC Genomics 2013, 14:249 (15 April 2013) Abstract \| Provisional PDF \| PubMed
		Research article Exome sequencing of senescence-accelerated mice (SAM) reveals deleterious mutations in degenerative disease-causing genes Kumpei Tanisawa, Eri Mikami, Noriyuki Fuku, Yoko Honda, Shuji Honda, Ikuro Ohsawa, Masafumi Ito, Shogo Endo, Kunio Ihara, Kinji Ohno, Yuki Kishimoto, Akihito Ishigami, Naoki Maruyama, Motoji Sawabe, Hiroyoshi Iseki, Yasushi Okazaki, Sanae Hasegawa-Ishii, Shiro Takei, Atsuyoshi Shimada, Masanori Hosokawa, Masayuki Mori, Keiichi Higuchi, Toshio Takeda, Mitsuru Higuchi, Masashi Tanaka BMC Genomics 2013, 14:248 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Candidatus Liberibacter americanus induces significant reprogramming of the transcriptome of the susceptible citrus genotype Valéria Mafra, Polyana K Martins, Carolina S Francisco, Marcelo Ribeiro-Alves, Juliana Freitas-Astúa, Marcos A Machado BMC Genomics 2013, 14:247 (12 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Conserved expression of natural antisense transcripts in mammals Maurice HT Ling, Yuguang Ban, Hongxiu Wen, San Ming Wang, Steven X Ge BMC Genomics 2013, 14:243 (12 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Transcriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing Michaela Novodvorska, Kimran Hayer, Steven T Pullan, Raymond Wilson, Martin J Blythe, Hein Stam, Malcolm Stratford, David B Archer BMC Genomics 2013, 14:246 (11 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Transcriptome analysis reveals ginsenosides biosynthetic genes, microRNAs and simple sequence repeats in Panax ginseng C. A. Meyer Chunfang Li, Yingjie Zhu, Xu Guo, Chao Sun, Hongmei Luo, Jingyuan Song, Ying Li, Lizhi Wang, Jun Qian, Shilin Chen BMC Genomics 2013, 14:245 (11 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Novel genomes and genome constitutions identified by GISH and 5S rDNA and knotted1 genomic sequences in the genus Setaria Meicheng Zhao, Hui Zhi, Andrew N Doust, Wei Li, Yongfang Wang, Haiquan Li, Guanqing Jia, Yongqiang Wang, Ning Zhang, Xianmin Diao BMC Genomics 2013, 14:244 (11 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Spir2; a novel QTL on chromosome 4 contributes to susceptibility to pneumococcal infection in mice Laura Wisby, Vitor E Fernandes, Daniel R Neill, Aras Kadioglu, Peter W Andrew, Paul Denny BMC Genomics 2013, 14:242 (11 April 2013) Abstract \| Provisional PDF \| PubMed
		Research article Comparative transcriptome analysis of Gossypium hirsutum L. in response to sap sucking insects: aphid and whitefly Neeraj Kumar Dubey, Ridhi Goel, Alok Ranjan, Asif Idris, Sunil Kumar Singh, Sumit K Bag, Krishnappa Chandrashekar, Kapil Deo Pandey, Pradhyumna Kumar Singh, Samir V Sawant BMC Genomics 2013, 14:241 (11 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed

	All
		Methodology article Simultaneous miRNA and mRNA transcriptome profiling of human myoblasts reveals a novel set of myogenic differentiation-associated miRNAs and their target genes Petr Dmitriev, Ana Barat, Anna Polesskaya, Mary J O’Connell, Thomas Robert, Philippe Dessen, Thomas A Walsh, Vladimir Lazar, Ahmed Turki, Gilles Carnac, Dalila Laoudj-Chenivesse, Marc Lipinski, Yegor S Vassetzky BMC Genomics 2013, 14:265 (18 April 2013) Abstract \| Full text \| PDF \| PubMed
		Research article Dynamic recruitment of microRNAs to their mRNA targets in the regenerating liver Jonathan Schug, Lindsay B McKenna, Gabriel Walton, Nicholas Hand, Sarmistha Mukherjee, Kow Essuman, Zhongjie Shi, Yan Gao, Karen Markley, Momo Nakagawa, Vasumathi Kameswaran, Anastassios Vourekas, Joshua R Friedman, Klaus H Kaestner, Linda E Greenbaum BMC Genomics 2013, 14:264 (18 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogeny Shi-Hui Niu, Zhe-Xin Li, Hu-Wei Yuan, Xiao-Yang Chen, Yue Li, Wei Li BMC Genomics 2013, 14:263 (18 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Copy number variants in locally raised Chinese chicken genomes determined using array comparative genomic hybridization Ming Tian, Yanqiang Wang, Xiaorong Gu, Chungang Feng, Suyun Fang, Xiaoxiang Hu, Ning Li BMC Genomics 2013, 14:262 (17 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Worldwide population distribution of the common LCE3C-LCE3B deletion associated with psoriasis and other autoimmune disorders Laia Bassaganyas, Eva Riveira-Muñoz, Manel García-Aragonés, Juan R González, Mario Cáceres, Lluís Armengol, Xavier Estivill BMC Genomics 2013, 14:261 (17 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Expression of concern Expression of concern: subfunctionalization reduces the fitness cost of gene duplication in humans by buffering dosage imbalances Maria K Kowalczuk, Shreeya Nanda, Elizabeth C Moylan BMC Genomics 2013, 14:260 (17 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Transcriptional basis of the acclimation to high environmental temperature at the olfactory receptor organs of Drosophila melanogaster Jacob Riveron, Tamara Boto, Esther Alcorta BMC Genomics 2013, 14:259 (17 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on the ENCODE array Charles Vadnais, Arif A Awan, Ryoko Harada, Pier-Luc Clermont, Lam Leduy, Ginette Bérubé, Alain Nepveu BMC Genomics 2013, 14:258 (16 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Improving mammalian genome scaffolding using large insert mate-pair next-generation sequencing Sebastiaan van Heesch, Wigard P Kloosterman, Nico Lansu, Frans-Paul Ruzius, Elizabeth Levandowsky, Clarence C Lee, Shiguo Zhou, Steve Goldstein, David C Schwartz, Timothy T Harkins, Victor Guryev, Edwin Cuppen BMC Genomics 2013, 14:257 (16 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Changes in the transcriptome of the malaria parasite Plasmodium falciparum during the initial phase of transmission from the human to the mosquito Che Julius Ngwa, Matthias Scheuermayer, Gunnar Rudolf Mair, Selina Kern, Thomas Brügl, Christine Clara Wirth, Makoah Nigel Aminake, Jochen Wiesner, Rainer Fischer, Andreas Vilcinskas, Gabriele Pradel BMC Genomics 2013, 14:256 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article A zebrafish high throughput screening system used for Staphylococcus epidermidis infection marker discovery Wouter J Veneman, Oliver W Stockhammer, Leonie de Boer, Sebastian A J Zaat, Annemarie H Meijer, Herman P Spaink BMC Genomics 2013, 14:255 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Correspondence Non-canonical protein-DNA interactions identified by ChIP are not artifacts Richard P Bonocora, Devon M Fitzgerald, Anne M Stringer, Joseph T Wade BMC Genomics 2013, 14:254 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Methodology article Massively-parallel sequencing of genes on a single chromosome: a comparison of solution hybrid selection and flow sorting Jamie K Teer, Jennifer J Johnston, Sarah L Anzick, Marbin Pineda, Gary Stone, NISC Comparative Sequencing Program1, Paul S Meltzer, James C Mullikin, Leslie G Biesecker BMC Genomics 2013, 14:253 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Reductive evolution in Streptococcus agalactiae and the emergence of a host adapted lineage Isabelle Rosinski-Chupin, Elisabeth Sauvage, Barbara Mairey, Sophie Mangenot, Laurence Ma, Violette Da Cunha, Christophe Rusniok, Christiane Bouchier, Valérie Barbe, Philippe Glaser BMC Genomics 2013, 14:252 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article A multistep genomic screen identifies new genes required for repair of DNA double-strand breaks in Saccharomyces cerevisiae Jennifer Summers McKinney, Sunaina Sethi, Jennifer DeMars Tripp, Thuy N Nguyen, Brian A Sanderson, James W Westmoreland, Michael A Resnick, L Kevin Lewis BMC Genomics 2013, 14:251 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea Zahra-Katy Navabi, Terry Huebert, Andrew G Sharpe, Carmel M O¿Neill, Ian Bancroft, Isobel AP Parkin BMC Genomics 2013, 14:250 (15 April 2013) Abstract \| Provisional PDF \| PubMed
		Research article The significance of alternative transcripts for Caenorhabditis elegans transcription factor genes, based on expression pattern analysis Hannah L Craig, Julia Wirtz, Sophie Bamps, Colin T Dolphin, Ian A Hope BMC Genomics 2013, 14:249 (15 April 2013) Abstract \| Provisional PDF \| PubMed
		Research article Exome sequencing of senescence-accelerated mice (SAM) reveals deleterious mutations in degenerative disease-causing genes Kumpei Tanisawa, Eri Mikami, Noriyuki Fuku, Yoko Honda, Shuji Honda, Ikuro Ohsawa, Masafumi Ito, Shogo Endo, Kunio Ihara, Kinji Ohno, Yuki Kishimoto, Akihito Ishigami, Naoki Maruyama, Motoji Sawabe, Hiroyoshi Iseki, Yasushi Okazaki, Sanae Hasegawa-Ishii, Shiro Takei, Atsuyoshi Shimada, Masanori Hosokawa, Masayuki Mori, Keiichi Higuchi, Toshio Takeda, Mitsuru Higuchi, Masashi Tanaka BMC Genomics 2013, 14:248 (15 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Candidatus Liberibacter americanus induces significant reprogramming of the transcriptome of the susceptible citrus genotype Valéria Mafra, Polyana K Martins, Carolina S Francisco, Marcelo Ribeiro-Alves, Juliana Freitas-Astúa, Marcos A Machado BMC Genomics 2013, 14:247 (12 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Conserved expression of natural antisense transcripts in mammals Maurice HT Ling, Yuguang Ban, Hongxiu Wen, San Ming Wang, Steven X Ge BMC Genomics 2013, 14:243 (12 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Transcriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing Michaela Novodvorska, Kimran Hayer, Steven T Pullan, Raymond Wilson, Martin J Blythe, Hein Stam, Malcolm Stratford, David B Archer BMC Genomics 2013, 14:246 (11 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Transcriptome analysis reveals ginsenosides biosynthetic genes, microRNAs and simple sequence repeats in Panax ginseng C. A. Meyer Chunfang Li, Yingjie Zhu, Xu Guo, Chao Sun, Hongmei Luo, Jingyuan Song, Ying Li, Lizhi Wang, Jun Qian, Shilin Chen BMC Genomics 2013, 14:245 (11 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Novel genomes and genome constitutions identified by GISH and 5S rDNA and knotted1 genomic sequences in the genus Setaria Meicheng Zhao, Hui Zhi, Andrew N Doust, Wei Li, Yongfang Wang, Haiquan Li, Guanqing Jia, Yongqiang Wang, Ning Zhang, Xianmin Diao BMC Genomics 2013, 14:244 (11 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed
		Research article Spir2; a novel QTL on chromosome 4 contributes to susceptibility to pneumococcal infection in mice Laura Wisby, Vitor E Fernandes, Daniel R Neill, Aras Kadioglu, Peter W Andrew, Paul Denny BMC Genomics 2013, 14:242 (11 April 2013) Abstract \| Provisional PDF \| PubMed
		Research article Comparative transcriptome analysis of Gossypium hirsutum L. in response to sap sucking insects: aphid and whitefly Neeraj Kumar Dubey, Ridhi Goel, Alok Ranjan, Asif Idris, Sunil Kumar Singh, Sumit K Bag, Krishnappa Chandrashekar, Kapil Deo Pandey, Pradhyumna Kumar Singh, Samir V Sawant BMC Genomics 2013, 14:241 (11 April 2013) Abstract \| Full text \| PDF \| ePUB \| PubMed