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		Research article Genome-wide recruitment to Polycomb-modified chromatin and activity regulation of the synovial sarcoma oncogene SYT-SSX2 Christina B Garcia, Christian M Shaffer, Josiane E Eid BMC Genomics 2012, 13:189 (17 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Differences in DNA curvature-related sequence periodicity between prokaryotic chromosomes and phages, and relationship to chromosomal prophage content Jacob Abel, Jan Mrázek BMC Genomics 2012, 13:188 (15 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genetic and genome-wide transcriptomic analyses identify co-regulation of oxidative response and hormone transcript abundance with vitamin C content in tomato fruit Viviana Lima-Silva, Abel Rosado, Vitor Amorim-Silva, Antonio Muñoz-Mérida, Clara Pons, Aureliano Bombarely, Oswaldo Trelles, Rafael Fernández-Muñoz, Antonio Granell, Victoriano Valpuesta, Miguel Botella BMC Genomics 2012, 13:187 (14 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Estimating RNA-quality using GeneChip microarrays Mario Fasold, Hans Binder BMC Genomics 2012, 13:186 (14 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Methodology article Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.) Kevin Stoffel, Hans van Leeuwen, Alexander Kozik, David Caldwell, Hamid Ashrafi, Xinping Cui, Xiaoping Tan, Theresa Hill, Sebastian Reyes-Chin-Wo, Maria-Jose Truco, Richard W Michelmore, Allen Van Deynze BMC Genomics 2012, 13:185 (14 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Transcription profiling reveals stage- and function-dependent expression patterns in the filarial nematode Brugia malayi Ben-Wen Li, Zhengyuan Wang, Amy C Rush, Makedonka Mitreva, Gary J Weil BMC Genomics 2012, 13:184 (14 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Identification of avian W-linked contigs by short-read sequencing Nancy Chen, Daniel W Bellott, David C Page, Andrew G Clark BMC Genomics 2012, 13:183 (14 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article The dependence of expression of NF-κB-dependent genes: statistics and evolutionary conservation of control sequences in the promoter and in the 3′ UTR Marta Iwanaszko, Allan R Brasier, Marek Kimmel BMC Genomics 2012, 13:182 (11 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Fast skeletal muscle transcriptome of the Gilthead sea bream (Sparus aurata) determined by next generation sequencing Daniel Garcia de la serrana, Alicia Estévez, Karl Andree, Ian A Johnston BMC Genomics 2012, 13:181 (11 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Genome wide response to dietary tetradecylthioacetic acid supplementation in the heart of Atlantic Salmon (Salmo salar L) Fabian Grammes, Kjell-Arne Rørvik, Magny S Thomassen, Rolf K Berge, Harald Takle BMC Genomics 2012, 13:180 (11 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Unique core genomes of the bacterial family vibrionaceae: insights into niche adaptation and speciation Tim Kahlke, Alexander Goesmann, Erik Hjerde, Nils Willassen, Peik Haugen BMC Genomics 2012, 13:179 (10 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Improving ancient DNA read mapping against modern reference genomes Mikkel Schubert, Aurelien Ginolhac, Stinus Lindgreen, John F Thompson, Khaled AS AL-Rasheid, Eske Willerslev, Anders Krogh, Ludovic Orlando BMC Genomics 2012, 13:178 (10 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Improving the performance of true single molecule sequencing for ancient DNA Aurelien Ginolhac, Julia Vilstrup, Jesper Stenderup, Morten Rasmussen, Mathias Stiller, Beth Shapiro, Grant Zazula, Duane Froese, Kathleen E Steinmann, John F Thompson, Khaled AS AL-Rasheid, Thomas MP Gilbert, Eske Willerslev, Ludovic Orlando BMC Genomics 2012, 13:177 (10 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Construction of physical maps for the sex-specific regions of papaya sex chromosomes Jong-Kuk Na, Jianping Wang, Jan E Murray, Andrea R Gschwend, Wenli Zhang, Qingyi Yu, Rafael Pérez, F Feltus, Cuixia Chen, Zdenek Kubat, Paul H Moore, Jiming Jiang, Andrew H Paterson, Ray Ming BMC Genomics 2012, 13:176 (8 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Phylogenomic analysis of UDP glycosyltransferase 1 multigene family in Linum usitatissimum identified genes with varied expression patterns Vitthal T Barvkar, Varsha C Pardeshi, Sandip M Kale, Narendra Y Kadoo, Vidya S Gupta BMC Genomics 2012, 13:175 (8 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article The footprint of metabolism in the organization of mammalian genomes Luisa Berná, Ankita Chaurasia, Claudia Angelini, Concetta Federico, Salvatore Saccone, Giuseppe D'Onofrio BMC Genomics 2012, 13:174 (8 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide expression profiling shows transcriptional reprogramming in Fusarium graminearum by Fusarium graminearum virus 1-DK21 infection Won Cho, Jisuk Yu, Kyung-Mi Lee, Moonil Son, Kyunghun Min, Yin-Won Lee, Kook-Hyung Kim BMC Genomics 2012, 13:173 (6 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Expansion of CORE-SINEs in the genome of the Tasmanian devil Maria A Nilsson, Axel Janke, Elizabeth P Murchison, Zemin Ning, Björn M Hallström BMC Genomics 2012, 13:172 (6 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genomic characterization of the conditionally dispensable chromosome in Alternaria arborescens provides evidence for horizontal gene transfer Jinnan Hu, Chenxi Chen, Tobin Peever, Ha Dang, Christopher Lawrence, Thomas Mitchell BMC Genomics 2012, 13:171 (6 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article PhenoLink - a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains Jumamurat R Bayjanov, Douwe Molenaar, Vesela Tzeneva, Roland J Siezen, Sacha A F T van Hijum BMC Genomics 2012, 13:170 (4 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Genome organization and characteristics of soybean microRNAs Marie Turner, Oliver Yu, Senthil Subramanian BMC Genomics 2012, 13:169 (4 May 2012) Abstract \| Full text \| PDF \| PubMed
		Database AlliumMap-A comparative genomics resource for cultivated Allium vegetables John McCallum, Samantha Baldwin, Masayoshi Shigyo, Yanbo Deng, Sjaak van Heusden, Meeghan Pither-Joyce, Fernand Kenel BMC Genomics 2012, 13:168 (4 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary AlliumMap is an online resource for the genetically poorly understood onion genus comprising genetic mapping and marker data from different species and crosses, and integrating these into an Allium comparative consensus map.
		Research article Transcriptome analysis of a long-lived natural Drosophila variant: a prominent role of stress- and reproduction-genes in lifespan extension Agnieszka Doroszuk, Martijs J Jonker, Nicolien Pul, Timo M Breit, Bas J Zwaan BMC Genomics 2012, 13:167 (4 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Mitochondrial genome evolution in species belonging to the Phialocephala fortinii s.l. - Acephala applanata species complex Angelo Duò, Rémy Bruggmann, Stefan Zoller, Matthias Bernt, Christoph R Grünig BMC Genomics 2012, 13:166 (4 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099^T Shivakumara Siddaramappa, Jean F Challacombe, Rosana E DeCastro, Friedhelm Pfeiffer, Diego E Sastre, María I Giménez, Roberto A Paggi, John C Detter, Karen W Davenport, Lynne A Goodwin, Nikos Kyrpides, Roxanne Tapia, Samuel Pitluck, Susan Lucas, Tanja Woyke, Julie A Maupin-Furlow BMC Genomics 2012, 13:165 (4 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article GeSICA: Genome segmentation from intra-chromosomal associations Lin Liu, Yiqian Zhang, Jianxing Feng, Ning Zheng, Junfeng Yin, Yong Zhang BMC Genomics 2012, 13:164 (4 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Large-scale transcriptome sequencing and gene analyses in the crab-eating macaque (Macaca fascicularis) for biomedical research Jae-Won Huh, Young-Hyun Kim, Sang-Je Park, Dae-Soo Kim, Sang-Rae Lee, Kyoung-Min Kim, Kang-Jin Jeong, Ji-Su Kim, Bong-Seok Song, Bo-Woong Sim, Sun-Uk Kim, Sang-Hyun Kim, Kyu-Tae Chang BMC Genomics 2012, 13:163 (4 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes Patricia C Dos Santos, Zhong Fang, Steven W Mason, João C Setubal, Ray Dixon BMC Genomics 2012, 13:162 (3 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Generation and analysis of a barcode-tagged insertion mutant library in the fission yeast Schizosaccharomyces pombe Bo-Ruei Chen, Devin C Hale, Peter J Ciolek, Kurt W Runge BMC Genomics 2012, 13:161 (3 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Gene expression signatures modulated by epidermal growth factor receptor activation and their relationship to cetuximab resistance in head and neck squamous cell carcinoma Elana J Fertig, Qing Ren, Haixia Cheng, Hiromitsu Hatakeyama, Adam P Dicker, Ulrich Rodeck, Michael Considine, Michael F Ochs, Christine H Chung BMC Genomics 2012, 13:160 (1 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Characterization of host microRNAs that respond to DNA virus infection in a crustacean Tianzhi Huang, Dandan Xu, Xiaobo Zhang BMC Genomics 2012, 13:159 (30 April 2012) Abstract \| Full text \| PDF \| PubMed
		Database MASiVEdb: the Sirevirus Plant Retrotransposon Database Alexandros Bousios, Evangelia Minga, Nikoleta Kalitsou, Maria Pantermali, Aphrodite Tsaballa, Nikos Darzentas BMC Genomics 2012, 13:158 (30 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Metabolic classification of microbial genomes using functional probes Chi-Ching Lee, Wei-Cheng Lo, Szu-Ming Lai, Yi-Ping Chen, Chuan Tang, Ping-Chiang Lyu BMC Genomics 2012, 13:157 (27 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article The stable traits of melanoma genetics: an alternate approach to target discovery Tara L Spivey, Valeria De Giorgi, Yingdong Zhao, Davide Bedognetti, Zoltan Pos, Qiuzhen Liu, Sara Tomei, Maria Ascierto, Lorenzo Uccellini, Jennifer Reinboth, Lotfi Chouchane, David F Stroncek, Ena Wang, Francesco M Marincola BMC Genomics 2012, 13:156 (26 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Evolution of vertebrate interferon inducible transmembrane proteins Danielle Hickford, Stephen Frankenberg, Geoff Shaw, Marilyn B Renfree BMC Genomics 2012, 13:155 (26 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article MicroRNA modulate alveolar epithelial response to cyclic stretch Nadir Yehya, Adi Yerrapureddy, John Tobias, Susan S Margulies BMC Genomics 2012, 13:154 (26 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Characterization of the transcriptome profiles related to globin gene switching during in vitro erythroid maturation Biaoru Li, Lianghao Ding, Wei Li, Michael D Story, Betty S Pace BMC Genomics 2012, 13:153 (26 April 2012) Abstract \| Full text \| PDF \| PubMed \| 1 comment
		Research article Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features Chih-yu Chen, Quaid Morris, Jennifer A Mitchell BMC Genomics 2012, 13:152 (26 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction Gina A Garzón-Martínez, Z Zhu, David Landsman, Luz S Barrero, Leonardo Mariño-Ramírez BMC Genomics 2012, 13:151 (25 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Functional organization and its implication in evolution of the human protein-protein interaction network Yiqiang Zhao, Sean D Mooney BMC Genomics 2012, 13:150 (24 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Characterization of the transcriptome of an ecologically important avian species, the Vinous-throated Parrotbill Paradoxornis webbianus bulomachus (Paradoxornithidae; Aves) Jui-Hua Chu, Rong-Chien Lin, Chia-Fen Yeh, Yu-Cheng Hsu, Shou-Hsien Li BMC Genomics 2012, 13:149 (24 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Identification and expression analysis of methyl jasmonate responsive ESTs in paclitaxel producing Taxus cuspidata suspension culture cells Sangram K Lenka, Nadia Boutaoui, Bibin Paulose, Kham Vongpaseuth, Jennifer Normanly, Susan C Roberts, Elsbeth L Walker BMC Genomics 2012, 13:148 (24 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide analysis of Pax8 binding provides new insights into thyroid functions Sergio Ruiz-Llorente, Enrique Carrillo de Pau, Ana Sastre-Perona, Cristina Montero-Conde, Gonzalo Gómez-López, James A Fagin, Alfonso Valencia, David G Pisano, Pilar Santisteban BMC Genomics 2012, 13:147 (24 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Meta-analysis of Chicken – Salmonella infection experiments Marinus FW te Pas, Ina Hulsegge, Dirkjan Schokker, Mari A Smits, Mark Fife, Rima Zoorob, Marie-Laure Endale, Johanna MJ Rebel BMC Genomics 2012, 13:146 (24 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Comparing the mitochondrial genomes of Wolbachia-dependent and independent filarial nematode species Samantha N McNulty, Andrew S Mullin, Jefferson A Vaughan, Vasyl V Tkach, Gary J Weil, Peter U Fischer BMC Genomics 2012, 13:145 (24 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes Torsten Hain, Rohit Ghai, André Billion, Carsten Kuenne, Christiane Steinweg, Benjamin Izar, Walid Mohamed, Mobarak Mraheil, Eugen Domann, Silke Schaffrath, Uwe Kärst, Alexander Goesmann, Sebastian Oehm, Alfred Pühler, Rainer Merkl, Sonja Vorwerk, Philippe Glaser, Patricia Garrido, Christophe Rusniok, Carmen Buchrieser, Werner Goebel, Trinad Chakraborty BMC Genomics 2012, 13:144 (24 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Genome-wide host responses against infectious laryngotracheitis virus vaccine infection in chicken embryo lung cells Jeongyoon Lee, Walter G Bottje, Byung-Whi Kong BMC Genomics 2012, 13:143 (24 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy Kankshita Swaminathan, Won Chae, Therese Mitros, Kranthi Varala, Liang Xie, Adam Barling, Katarzyna Glowacka, Megan Hall, Stanislaw Jezowski, Ray Ming, Matthew Hudson, John A Juvik, Daniel S Rokhsar, Stephen P Moose BMC Genomics 2012, 13:142 (24 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient Jasmin Schröder, Irena Maus, Katja Meyer, Stephanie Wördemann, Jochen Blom, Sebastian Jaenicke, Jessica Schneider, Eva Trost, Andreas Tauch BMC Genomics 2012, 13:141 (23 April 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article A transcriptome map of perennial ryegrass (Lolium perenne L.) Bruno Studer, Stephen Byrne, Rasmus O Nielsen, Frank Panitz, Christian Bendixen, Md Islam, Matthias Pfeifer, Thomas Lübberstedt, Torben Asp BMC Genomics 2012, 13:140 (18 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central

	All
		Research article Genome-wide recruitment to Polycomb-modified chromatin and activity regulation of the synovial sarcoma oncogene SYT-SSX2 Christina B Garcia, Christian M Shaffer, Josiane E Eid BMC Genomics 2012, 13:189 (17 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Differences in DNA curvature-related sequence periodicity between prokaryotic chromosomes and phages, and relationship to chromosomal prophage content Jacob Abel, Jan Mrázek BMC Genomics 2012, 13:188 (15 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genetic and genome-wide transcriptomic analyses identify co-regulation of oxidative response and hormone transcript abundance with vitamin C content in tomato fruit Viviana Lima-Silva, Abel Rosado, Vitor Amorim-Silva, Antonio Muñoz-Mérida, Clara Pons, Aureliano Bombarely, Oswaldo Trelles, Rafael Fernández-Muñoz, Antonio Granell, Victoriano Valpuesta, Miguel Botella BMC Genomics 2012, 13:187 (14 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Estimating RNA-quality using GeneChip microarrays Mario Fasold, Hans Binder BMC Genomics 2012, 13:186 (14 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Methodology article Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.) Kevin Stoffel, Hans van Leeuwen, Alexander Kozik, David Caldwell, Hamid Ashrafi, Xinping Cui, Xiaoping Tan, Theresa Hill, Sebastian Reyes-Chin-Wo, Maria-Jose Truco, Richard W Michelmore, Allen Van Deynze BMC Genomics 2012, 13:185 (14 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Transcription profiling reveals stage- and function-dependent expression patterns in the filarial nematode Brugia malayi Ben-Wen Li, Zhengyuan Wang, Amy C Rush, Makedonka Mitreva, Gary J Weil BMC Genomics 2012, 13:184 (14 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Identification of avian W-linked contigs by short-read sequencing Nancy Chen, Daniel W Bellott, David C Page, Andrew G Clark BMC Genomics 2012, 13:183 (14 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article The dependence of expression of NF-κB-dependent genes: statistics and evolutionary conservation of control sequences in the promoter and in the 3′ UTR Marta Iwanaszko, Allan R Brasier, Marek Kimmel BMC Genomics 2012, 13:182 (11 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Fast skeletal muscle transcriptome of the Gilthead sea bream (Sparus aurata) determined by next generation sequencing Daniel Garcia de la serrana, Alicia Estévez, Karl Andree, Ian A Johnston BMC Genomics 2012, 13:181 (11 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Genome wide response to dietary tetradecylthioacetic acid supplementation in the heart of Atlantic Salmon (Salmo salar L) Fabian Grammes, Kjell-Arne Rørvik, Magny S Thomassen, Rolf K Berge, Harald Takle BMC Genomics 2012, 13:180 (11 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Unique core genomes of the bacterial family vibrionaceae: insights into niche adaptation and speciation Tim Kahlke, Alexander Goesmann, Erik Hjerde, Nils Willassen, Peik Haugen BMC Genomics 2012, 13:179 (10 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Improving ancient DNA read mapping against modern reference genomes Mikkel Schubert, Aurelien Ginolhac, Stinus Lindgreen, John F Thompson, Khaled AS AL-Rasheid, Eske Willerslev, Anders Krogh, Ludovic Orlando BMC Genomics 2012, 13:178 (10 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Improving the performance of true single molecule sequencing for ancient DNA Aurelien Ginolhac, Julia Vilstrup, Jesper Stenderup, Morten Rasmussen, Mathias Stiller, Beth Shapiro, Grant Zazula, Duane Froese, Kathleen E Steinmann, John F Thompson, Khaled AS AL-Rasheid, Thomas MP Gilbert, Eske Willerslev, Ludovic Orlando BMC Genomics 2012, 13:177 (10 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Construction of physical maps for the sex-specific regions of papaya sex chromosomes Jong-Kuk Na, Jianping Wang, Jan E Murray, Andrea R Gschwend, Wenli Zhang, Qingyi Yu, Rafael Pérez, F Feltus, Cuixia Chen, Zdenek Kubat, Paul H Moore, Jiming Jiang, Andrew H Paterson, Ray Ming BMC Genomics 2012, 13:176 (8 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Phylogenomic analysis of UDP glycosyltransferase 1 multigene family in Linum usitatissimum identified genes with varied expression patterns Vitthal T Barvkar, Varsha C Pardeshi, Sandip M Kale, Narendra Y Kadoo, Vidya S Gupta BMC Genomics 2012, 13:175 (8 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article The footprint of metabolism in the organization of mammalian genomes Luisa Berná, Ankita Chaurasia, Claudia Angelini, Concetta Federico, Salvatore Saccone, Giuseppe D'Onofrio BMC Genomics 2012, 13:174 (8 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide expression profiling shows transcriptional reprogramming in Fusarium graminearum by Fusarium graminearum virus 1-DK21 infection Won Cho, Jisuk Yu, Kyung-Mi Lee, Moonil Son, Kyunghun Min, Yin-Won Lee, Kook-Hyung Kim BMC Genomics 2012, 13:173 (6 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Expansion of CORE-SINEs in the genome of the Tasmanian devil Maria A Nilsson, Axel Janke, Elizabeth P Murchison, Zemin Ning, Björn M Hallström BMC Genomics 2012, 13:172 (6 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genomic characterization of the conditionally dispensable chromosome in Alternaria arborescens provides evidence for horizontal gene transfer Jinnan Hu, Chenxi Chen, Tobin Peever, Ha Dang, Christopher Lawrence, Thomas Mitchell BMC Genomics 2012, 13:171 (6 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article PhenoLink - a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains Jumamurat R Bayjanov, Douwe Molenaar, Vesela Tzeneva, Roland J Siezen, Sacha A F T van Hijum BMC Genomics 2012, 13:170 (4 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Genome organization and characteristics of soybean microRNAs Marie Turner, Oliver Yu, Senthil Subramanian BMC Genomics 2012, 13:169 (4 May 2012) Abstract \| Full text \| PDF \| PubMed
		Database AlliumMap-A comparative genomics resource for cultivated Allium vegetables John McCallum, Samantha Baldwin, Masayoshi Shigyo, Yanbo Deng, Sjaak van Heusden, Meeghan Pither-Joyce, Fernand Kenel BMC Genomics 2012, 13:168 (4 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary AlliumMap is an online resource for the genetically poorly understood onion genus comprising genetic mapping and marker data from different species and crosses, and integrating these into an Allium comparative consensus map.
		Research article Transcriptome analysis of a long-lived natural Drosophila variant: a prominent role of stress- and reproduction-genes in lifespan extension Agnieszka Doroszuk, Martijs J Jonker, Nicolien Pul, Timo M Breit, Bas J Zwaan BMC Genomics 2012, 13:167 (4 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Mitochondrial genome evolution in species belonging to the Phialocephala fortinii s.l. - Acephala applanata species complex Angelo Duò, Rémy Bruggmann, Stefan Zoller, Matthias Bernt, Christoph R Grünig BMC Genomics 2012, 13:166 (4 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099^T Shivakumara Siddaramappa, Jean F Challacombe, Rosana E DeCastro, Friedhelm Pfeiffer, Diego E Sastre, María I Giménez, Roberto A Paggi, John C Detter, Karen W Davenport, Lynne A Goodwin, Nikos Kyrpides, Roxanne Tapia, Samuel Pitluck, Susan Lucas, Tanja Woyke, Julie A Maupin-Furlow BMC Genomics 2012, 13:165 (4 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article GeSICA: Genome segmentation from intra-chromosomal associations Lin Liu, Yiqian Zhang, Jianxing Feng, Ning Zheng, Junfeng Yin, Yong Zhang BMC Genomics 2012, 13:164 (4 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Large-scale transcriptome sequencing and gene analyses in the crab-eating macaque (Macaca fascicularis) for biomedical research Jae-Won Huh, Young-Hyun Kim, Sang-Je Park, Dae-Soo Kim, Sang-Rae Lee, Kyoung-Min Kim, Kang-Jin Jeong, Ji-Su Kim, Bong-Seok Song, Bo-Woong Sim, Sun-Uk Kim, Sang-Hyun Kim, Kyu-Tae Chang BMC Genomics 2012, 13:163 (4 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes Patricia C Dos Santos, Zhong Fang, Steven W Mason, João C Setubal, Ray Dixon BMC Genomics 2012, 13:162 (3 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Generation and analysis of a barcode-tagged insertion mutant library in the fission yeast Schizosaccharomyces pombe Bo-Ruei Chen, Devin C Hale, Peter J Ciolek, Kurt W Runge BMC Genomics 2012, 13:161 (3 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Gene expression signatures modulated by epidermal growth factor receptor activation and their relationship to cetuximab resistance in head and neck squamous cell carcinoma Elana J Fertig, Qing Ren, Haixia Cheng, Hiromitsu Hatakeyama, Adam P Dicker, Ulrich Rodeck, Michael Considine, Michael F Ochs, Christine H Chung BMC Genomics 2012, 13:160 (1 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Characterization of host microRNAs that respond to DNA virus infection in a crustacean Tianzhi Huang, Dandan Xu, Xiaobo Zhang BMC Genomics 2012, 13:159 (30 April 2012) Abstract \| Full text \| PDF \| PubMed
		Database MASiVEdb: the Sirevirus Plant Retrotransposon Database Alexandros Bousios, Evangelia Minga, Nikoleta Kalitsou, Maria Pantermali, Aphrodite Tsaballa, Nikos Darzentas BMC Genomics 2012, 13:158 (30 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Metabolic classification of microbial genomes using functional probes Chi-Ching Lee, Wei-Cheng Lo, Szu-Ming Lai, Yi-Ping Chen, Chuan Tang, Ping-Chiang Lyu BMC Genomics 2012, 13:157 (27 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article The stable traits of melanoma genetics: an alternate approach to target discovery Tara L Spivey, Valeria De Giorgi, Yingdong Zhao, Davide Bedognetti, Zoltan Pos, Qiuzhen Liu, Sara Tomei, Maria Ascierto, Lorenzo Uccellini, Jennifer Reinboth, Lotfi Chouchane, David F Stroncek, Ena Wang, Francesco M Marincola BMC Genomics 2012, 13:156 (26 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Evolution of vertebrate interferon inducible transmembrane proteins Danielle Hickford, Stephen Frankenberg, Geoff Shaw, Marilyn B Renfree BMC Genomics 2012, 13:155 (26 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article MicroRNA modulate alveolar epithelial response to cyclic stretch Nadir Yehya, Adi Yerrapureddy, John Tobias, Susan S Margulies BMC Genomics 2012, 13:154 (26 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Characterization of the transcriptome profiles related to globin gene switching during in vitro erythroid maturation Biaoru Li, Lianghao Ding, Wei Li, Michael D Story, Betty S Pace BMC Genomics 2012, 13:153 (26 April 2012) Abstract \| Full text \| PDF \| PubMed \| 1 comment
		Research article Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features Chih-yu Chen, Quaid Morris, Jennifer A Mitchell BMC Genomics 2012, 13:152 (26 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction Gina A Garzón-Martínez, Z Zhu, David Landsman, Luz S Barrero, Leonardo Mariño-Ramírez BMC Genomics 2012, 13:151 (25 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Functional organization and its implication in evolution of the human protein-protein interaction network Yiqiang Zhao, Sean D Mooney BMC Genomics 2012, 13:150 (24 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Characterization of the transcriptome of an ecologically important avian species, the Vinous-throated Parrotbill Paradoxornis webbianus bulomachus (Paradoxornithidae; Aves) Jui-Hua Chu, Rong-Chien Lin, Chia-Fen Yeh, Yu-Cheng Hsu, Shou-Hsien Li BMC Genomics 2012, 13:149 (24 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Identification and expression analysis of methyl jasmonate responsive ESTs in paclitaxel producing Taxus cuspidata suspension culture cells Sangram K Lenka, Nadia Boutaoui, Bibin Paulose, Kham Vongpaseuth, Jennifer Normanly, Susan C Roberts, Elsbeth L Walker BMC Genomics 2012, 13:148 (24 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Genome-wide analysis of Pax8 binding provides new insights into thyroid functions Sergio Ruiz-Llorente, Enrique Carrillo de Pau, Ana Sastre-Perona, Cristina Montero-Conde, Gonzalo Gómez-López, James A Fagin, Alfonso Valencia, David G Pisano, Pilar Santisteban BMC Genomics 2012, 13:147 (24 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Meta-analysis of Chicken – Salmonella infection experiments Marinus FW te Pas, Ina Hulsegge, Dirkjan Schokker, Mari A Smits, Mark Fife, Rima Zoorob, Marie-Laure Endale, Johanna MJ Rebel BMC Genomics 2012, 13:146 (24 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Comparing the mitochondrial genomes of Wolbachia-dependent and independent filarial nematode species Samantha N McNulty, Andrew S Mullin, Jefferson A Vaughan, Vasyl V Tkach, Gary J Weil, Peter U Fischer BMC Genomics 2012, 13:145 (24 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes Torsten Hain, Rohit Ghai, André Billion, Carsten Kuenne, Christiane Steinweg, Benjamin Izar, Walid Mohamed, Mobarak Mraheil, Eugen Domann, Silke Schaffrath, Uwe Kärst, Alexander Goesmann, Sebastian Oehm, Alfred Pühler, Rainer Merkl, Sonja Vorwerk, Philippe Glaser, Patricia Garrido, Christophe Rusniok, Carmen Buchrieser, Werner Goebel, Trinad Chakraborty BMC Genomics 2012, 13:144 (24 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Genome-wide host responses against infectious laryngotracheitis virus vaccine infection in chicken embryo lung cells Jeongyoon Lee, Walter G Bottje, Byung-Whi Kong BMC Genomics 2012, 13:143 (24 April 2012) Abstract \| Full text \| PDF \| PubMed
		Research article A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy Kankshita Swaminathan, Won Chae, Therese Mitros, Kranthi Varala, Liang Xie, Adam Barling, Katarzyna Glowacka, Megan Hall, Stanislaw Jezowski, Ray Ming, Matthew Hudson, John A Juvik, Daniel S Rokhsar, Stephen P Moose BMC Genomics 2012, 13:142 (24 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient Jasmin Schröder, Irena Maus, Katja Meyer, Stephanie Wördemann, Jochen Blom, Sebastian Jaenicke, Jessica Schneider, Eva Trost, Andreas Tauch BMC Genomics 2012, 13:141 (23 April 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article A transcriptome map of perennial ryegrass (Lolium perenne L.) Bruno Studer, Stephen Byrne, Rasmus O Nielsen, Frank Panitz, Christian Bendixen, Md Islam, Matthias Pfeifer, Thomas Lübberstedt, Torben Asp BMC Genomics 2012, 13:140 (18 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central