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Behavioral and neurogenomic transcriptome changes in wild-derived zebrafish with fluoxetine treatment
Ryan Y Wong, Sarah E Oxendine, John Godwin BMC Genomics 2013, 14:348 (24 May 2013)
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Unsupervised genome-wide recognition of local relationship patterns
Neda Zamani, Pamela Russell, Henrik Lantz, Marc P Hoeppner, Jennifer RS Meadows, Nagarjun Vijay, Evan Mauceli, Federica di Palma, Kerstin Lindblad-Toh, Patric Jern, Manfred G Grabherr BMC Genomics 2013, 14:347 (24 May 2013)
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Detection and genotyping of restriction fragment associated polymorphisms in polyploid crops with a pseudo-reference sequence: a case study in allotetraploid Brassica napus
Xun Chen, Xuemin Li, Bing Zhang, Jinsong Xu, Zhikun Wu, Bo Wang, Haitao Li, Muhammad Younas, Lei Huang, Yingfeng Luo, Jiangsheng Wu, Songnian Hu, Kede Liu BMC Genomics 2013, 14:346 (24 May 2013)
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Comparative analysis of 4C-Seq data generated from enzyme-based and sonication-based methods
Fan Gao, Zong Wei, Wange Lu, Kai Wang BMC Genomics 2013, 14:345 (24 May 2013)
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Genomic and expression analysis of the flax (Linum usitatissimum) family of glycosyl hydrolase 35 genes
Neil Hobson, Michael K Deyholos BMC Genomics 2013, 14:344 (23 May 2013)
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An integrative "omics" approach identifies new candidate genes to impact aroma volatiles in peach fruit
Gerardo Sánchez, Mónica Venegas-Calerón, Joaquín J Salas, Antonio Monforte, María L Badenes, Antonio Granell BMC Genomics 2013, 14:343 (23 May 2013)
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Genome-scale transcriptional analyses of first-generation interspecific sunflower hybrids reveals broad regulatory compatibility
Heather C Rowe, Loren H Rieseberg BMC Genomics 2013, 14:342 (23 May 2013)
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Identification of thyroid hormone receptor binding sites in developing mouse cerebellum
Remi Gagne, James R Green, Hongyan Dong, Mike G Wade, Carole L Yauk BMC Genomics 2013, 14:341 (23 May 2013)
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Insights into organ-specific pathogen defense responses in plants: RNA-seq analysis of potato tuber-Phytophthora infestans interactions
Liangliang Gao, Zheng Jin Tu, Benjamin P Millett, James M Bradeen BMC Genomics 2013, 14:340 (23 May 2013)
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Genomics-driven discovery of the pneumocandin biosynthetic gene cluster in the fungus Glarea lozoyensis
Li Chen, Qun Yue, Xinyu Zhang, Meichun Xiang, Chengshu Wang, Shaojie Li, Yongsheng Che, Francisco Javier Ortiz-López, Gerald F Bills, Xingzhong Liu, Zhiqiang An BMC Genomics 2013, 14:339 (20 May 2013)
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The role of microRNAs in the pathogenesis of MMPi-induced skin fibrodysplasia
Daniel P Tonge, Jonathan D Tugwood, Janet Kelsall, Timothy W Gant BMC Genomics 2013, 14:338 (20 May 2013)
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Integrative genomic analysis of CREB defines a critical role for transcription factor networks in mediating the fed/fasted switch in liver
Logan J Everett, John Le Lay, Sabina Lukovac, Diana Bernstein, David J Steger, Mitchell A Lazar, Klaus H Kaestner BMC Genomics 2013, 14:337 (17 May 2013)
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A simple and reproducible breast cancer prognostic test
Luigi Marchionni, Bahman Afsari, Donald Geman, Jeffrey T Leek BMC Genomics 2013, 14:336 (17 May 2013)
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Frequent loss of lineages and deficient duplications accounted for low copy number of disease resistance genes in Cucurbitaceae
Xiao Lin, Yu Zhang, Hanhui Kuang, Jiongjiong Chen BMC Genomics 2013, 14:335 (17 May 2013)
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Genomic and physiological variability within Group II (non-proteolytic) Clostridium botulinum
Sandra C Stringer, Andrew T Carter, Martin D Webb, Ewelina Wachnicka, Lisa C Crossman, Mohammed Sebaihia, Michael W Peck BMC Genomics 2013, 14:333 (16 May 2013)
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Structural and functional annotation of the porcine immunome
Harry D Dawson, Jane E Loveland, Géraldine Pascal, James GR Gilbert, Hirohide Uenishi, Katherine M Mann, Yongming Sang, Jie Zhang, Denise Carvalho-Silva, Toby Hunt, Matthew Hardy, Zhiliang Hu, Shu-Hong Zhao, Anna Anselmo, Hiroki Shinkai, Celine Chen, Bouabid Badaoui, Daniel Berman, Clara Amid, Mike Kay, David Lloyd, Catherine Snow, Takeya Morozumi, Ryan Pei-Yen Cheng, Megan Bystrom, Ronan Kapetanovic, John C Schwartz, Ranjit Kataria, Matthew Astley, Eric Fritz et al.
BMC Genomics 2013, 14:332 (15 May 2013)
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Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish
Håvard Aanes, Olga Østrup, Ingrid S Andersen, Lars F Moen, Sinnakaruppan Mathavan, Philippe Collas, Peter Alestrom BMC Genomics 2013, 14:331 (15 May 2013)
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Characterisation of a transcriptome to find sequence differences between two differentially migrating subspecies of the willow warbler Phylloscopus trochilus
Max Lundberg, John Boss, Björn Canbäck, Miriam Liedvogel, Keith W Larson, Mats Grahn, Susanne Åkesson, Staffan Bensch, Anthony Wright BMC Genomics 2013, 14:330 (14 May 2013)
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Comparative transcriptome analysis and marker development of two closely related Primrose species (Primula poissonii and Primula wilsonii)
Lu Zhang, Hai-Fei Yan, Wei Wu, Hui Yu, Xue-Jun Ge BMC Genomics 2013, 14:329 (14 May 2013)
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Optimizing de novo assembly of short-read RNA-seq data for phylogenomics
Ya Yang, Stephen A Smith BMC Genomics 2013, 14:328 (14 May 2013)
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The role of NOI-domain containing proteins in plant immune signaling
Ahmed J Afzal, Jin Hee Kim, David Mackey BMC Genomics 2013, 14:327 (14 May 2013)
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Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae
Vidhyavathi Raman, Stacey A Simon, Amanda Romag, Feray Demirci, Sandra M Mathioni, Jixian Zhai, Blake C Meyers, Nicole M Donofrio BMC Genomics 2013, 14:326 (12 May 2013)
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A gene expression restriction network mediated by sense and antisense Alu sequences located on protein-coding messenger RNAs
Kung-Hao Liang, Chau-Ting Yeh BMC Genomics 2013, 14:325 (11 May 2013)
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Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information
Ricardo de Matos Simoes, Matthias Dehmer, Frank Emmert-Streib BMC Genomics 2013, 14:324 (11 May 2013)
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Fate of the human Y chromosome linked genes and loci in prostate cancer cell lines DU145 and LNCaP
Sandeep Yadav, Anju Kumari, Sher Ali BMC Genomics 2013, 14:323 (11 May 2013)
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Nurses' workarounds in acute healthcare settings: a scoping review
Deborah S Debono, David Greenfield, Joanne F Travaglia, Janet C Long, Deborah Black, Julie Johnson, Jeffrey Braithwaite BMC Genomics 2013, 14:322 (10 May 2013)
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Alterations in expression of endometrial genes coding for proteins secreted into the uterine lumen during conceptus elongation in cattle
Niamh Forde, Jai P Mehta, Paul A McGettigan, Solomon Mamo, Fuller W Bazer, Thomas E Spencer, Pat Lonergan BMC Genomics 2013, 14:321 (10 May 2013)
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Sequencing platform and library preparation choices impact viral metagenomes
Sergei A Solonenko, J Ignacio-Espinoza, Adriana Alberti, Corinne Cruaud, Steven Hallam, Kostas Konstantinidis, Gene Tyson, Patrick Wincker, Matthew B Sullivan BMC Genomics 2013, 14:320 (10 May 2013)
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Characterization of human plasma-derived exosomal RNAs by deep sequencing
Xiaoyi Huang, Tiezheng Yuan, Michael Tschannen, Zhifu Sun, Howard Jacob, Meijun Du, Meihua Liang, Rachel L Dittmar, Yong Liu, Mingyu Liang, Manish Kohli, Stephen N Thibodeau, Lisa Boardman, Liang Wang BMC Genomics 2013, 14:319 (10 May 2013)
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Genome-wide identification, characterization and expression analysis of populus leucine-rich repeat receptor-like protein kinase genes
Yanjun Zan, Yan Ji, Yu Zhang, Shaohui Yang, Yingjin Song, Jiehua Wang BMC Genomics 2013, 14:318 (10 May 2013)
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A burst of ABC genes in the genome of the polyphagous spider mite Tetranychus urticae
Wannes Dermauw, Edward John Osborne, Richard M Clark, Miodrag Grbi¿, Luc Tirry, Thomas Van Leeuwen BMC Genomics 2013, 14:317 (10 May 2013)
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Discovering putative prion sequences in complete proteomes using probabilistic representations of Q/N-rich domains
Vladimir Espinosa Angarica, Salvador Ventura, Javier Sancho BMC Genomics 2013, 14:316 (10 May 2013)
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Exploring the larval transcriptome of the common sole (Solea solea L.)
Serena Ferraresso, Alessio Bonaldo, Luca Parma, Stefano Cinotti, Paola Massi, Luca Bargelloni, Pier Paolo Gatta BMC Genomics 2013, 14:315 (10 May 2013)
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Haplotype analysis of sucrose synthase gene family in three Saccharum species
Jisen Zhang, Jie Arro, Youqiang Chen, Ray Ming BMC Genomics 2013, 14:314 (10 May 2013)
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Meta-analyses of QTL for grain yield and anthesis silking interval in 18 maize populations evaluated under water-stressed and well-watered environments
Kassa Semagn, Yoseph Beyene, Marilyn L Warburton, Amsal Tarekegne, Stephen Mugo, Barbara Meisel, Pierre Sehabiague, Boddupalli M Prasanna BMC Genomics 2013, 14:313 (10 May 2013)
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Transcriptional analysis of oligosaccharide utilization by Bifidobacterium lactis Bl-04
Joakim Mark Andersen, Rodolphe Barrangou, Maher Abou Hachem, Sampo J Lahtinen, Yong-Jun Goh, Birte Svensson, Todd R Klaenhammer BMC Genomics 2013, 14:312 (10 May 2013)
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Novel genomic resources for a climate change sensitive mammal: characterization of the American pika transcriptome
Matthew A Lemay, Philippe Henry, Clayton T Lamb, Kelsey M Robson, Michael A Russello BMC Genomics 2013, 14:311 (10 May 2013)
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Discovering chromatin motifs using FAIRE sequencing and the human diploid genome
Chia-Chun Yang, Michael J Buck, Min-Hsuan Chen, Yun-Fan Chen, Hsin-Chi Lan, Jeremy JW Chen, Chao Cheng, Chun-Chi Liu BMC Genomics 2013, 14:310 (8 May 2013)
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Short and long-term genome stability analysis of prokaryotic genomes
Matteo Brilli, Pietro Liò, Vincent Lacroix, Marie-France Sagot BMC Genomics 2013, 14:309 (8 May 2013)
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Transcriptome-wide comparison of sequence variation in divergent ecotypes of kokanee salmon
Matthew A Lemay, David J Donnelly, Michael A Russello BMC Genomics 2013, 14:308 (7 May 2013)
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Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing
Anis Djari, Diane Esquerré, Bernard Weiss, Frédéric Martins, Cédric Meersseman, Mekki Boussaha, Christophe Klopp, Dominique Rocha BMC Genomics 2013, 14:307 (7 May 2013)
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A roadmap of cell-type specific gene expression during sequential stages of the arbuscular mycorrhiza symbiosis
Claudia Hogekamp, Helge Küster BMC Genomics 2013, 14:306 (7 May 2013)
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Study of whole genome linkage disequilibrium in Nellore cattle
Rafael Espigolan, Fernando Baldi, Arione A Boligon, Fabio RP Souza, Daniel GM Gordo, Rafael L Tonussi, Diércles F Cardoso, Henrique N Oliveira, Humberto Tonhati, Mehdi Sargolzaei, Flavio S Schenkel, Roberto Carvalheiro, Jesus A Ferro, Lucia G Albuquerque BMC Genomics 2013, 14:305 (5 May 2013)
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Functional transcriptomic analysis of the role of MAB-5/Hox in Q neuroblast migration in Caenorhabditis elegans
Joel V Tamayo, Mahekta Gujar, Stuart J Macdonald, Erik A Lundquist BMC Genomics 2013, 14:304 (4 May 2013)
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Temporal changes of cytochrome P450 (Cyp) and eicosanoid-related gene expression in the rat brain after traumatic brain injury
Matthew Birnie, Ryan Morrison, Ramatoulie Camara, Kenneth I Strauss BMC Genomics 2013, 14:303 (4 May 2013)
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Identification of somatic mutations in cancer through Bayesian-based analysis of sequenced genome pairs
Alexis Christoforides, John D Carpten, Glen J Weiss, Michael J Demeure, Daniel D Von Hoff, David W Craig BMC Genomics 2013, 14:302 (4 May 2013)
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Genome wide analysis of the complete GlnR nitrogen-response regulon in Mycobacterium smegmatis
Victoria A Jenkins, Geraint R Barton, Brian D Robertson, Kerstin J Williams BMC Genomics 2013, 14:301 (4 May 2013)
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Bacillus subtilis genome vector-based complete manipulation and reconstruction of genomic DNA for mouse transgenesis
Tetsuo Iwata, Shinya Kaneko, Yuh Shiwa, Takayuki Enomoto, Hirofumi Yoshikawa, Junji Hirota BMC Genomics 2013, 14:300 (3 May 2013)
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Functional genomic analysis of bile salt resistance in Enterococcus faecium
Xinglin Zhang, Damien Bierschenk, Janetta Top, Iacovos Anastasiou, Marc JM Bonten, Rob JL Willems, Willem van Schaik BMC Genomics 2013, 14:299 (3 May 2013)
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Reviewer Acknowledgement 2012
Catherine M Rice BMC Genomics 2013, 14:231 (2 May 2013)
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