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Research article   Open Access

Comparative transcriptome analysis of obligately asexual and cyclically sexual rotifers reveals genes with putative functions in sexual reproduction, dormancy, and asexual egg production

Sara J Hanson, Claus-Peter Stelzer, David B Welch, John M Logsdon BMC Genomics 2013, 14:412 (19 June 2013)

Abstract | Provisional PDF

Research article   Open Access

Comparative transcriptome analysis of microsclerotia development in Nomuraea rileyi

Zhangyong Song, Youping Yin, Shasha Jiang, Juanjuan Liu, Huan Chen, Zhongkang Wang BMC Genomics 2013, 14:411 (19 June 2013)

Abstract | Provisional PDF

Research article   Open Access

Phage cluster relationships identified through single gene analysis

Kyle C Smith, Eduardo Castro-Nallar, Joshua NB Fisher, Donald P Breakwell, Julianne H Grose, Sandra H Burnett BMC Genomics 2013, 14:410 (19 June 2013)

Abstract | Provisional PDF

Research article   Open Access

The complete mitochondrial genome of Solemya velum (Mollusca: Bivalvia) and its relationships with Conchifera

Federico Plazzi, Anisa Ribani, Marco Passamonti BMC Genomics 2013, 14:409 (18 June 2013)

Abstract | Provisional PDF

Research article   Open Access

Salmon lice (Lepeophtheirus salmonis) showing varying emamectin benzoate susceptibilities differ in neuronal acetylcholine receptor and GABA-gated chloride channel mRNA expression

Stephen N Carmichael, James E Bron, John B Taggart, Jacqueline H Ireland, Michaël Bekaert, Stewart TG Burgess, Philip J Skuce, Alasdair J Nisbet, Karim Gharbi, Armin Sturm BMC Genomics 2013, 14:408 (18 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon

Michele Vidotto, Alessandro Grapputo, Elisa Boscari, Federica Barbisan, Alessandro Coppe, Gilberto Grandi, Abhishek Kumar, Leonardo Congiu BMC Genomics 2013, 14:407 (18 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Combined methylation mapping of 5mC and 5hmC during early embryonic stages in bovine

Béatrice de Montera, Eric Fournier, Habib Allah Shojaei Saadi, Dominic Gagné, Isabelle Laflamme, Patrick Blondin, Marc-André Sirard, Claude Robert BMC Genomics 2013, 14:406 (18 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Cubilin expression is monoallelic and epigenetically augmented via PPARs

Obaidullah Aseem, Jeremy L Barth, Sandra C Klatt, Brian T Smith, W Scott Argraves BMC Genomics 2013, 14:405 (18 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Genetic heterogeneity revealed by sequence analysis of Mycobacterium tuberculosis isolates from extra-pulmonary tuberculosis patients

Sarbashis Das, Tanmoy Roychowdhury, Parameet Kumar, Anil Kumar, Priya Kalra, Jitendra Singh, Sarman Singh, HK Prasad, Alok Bhattacharya BMC Genomics 2013, 14:404 (17 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Transcript profiling by microarray and marker analysis of the short cotton (Gossypium hirsutum L.) fiber mutant Ligon lintless-1 (Li1)

Matthew K Gilbert, Ricky B Turley, Hee Jin Kim, Ping Li, Gregory Thyssen, Yuhong Tang, Christopher D Delhom, Marina Naoumkina, David D Fang BMC Genomics 2013, 14:403 (17 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

A unique nucleosome arrangement, maintained actively by chromatin remodelers facilitates transcription of yeast tRNA genes

Yatendra Kumar, Purnima Bhargava BMC Genomics 2013, 14:402 (17 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

The characteristics and expression profiles of the mitochondrial genome for the Mediterranean species of the Bemisia tabaci complex

Hua-Ling Wang, Jiao Yang, Laura M Boykin, Qiong-Yi Zhao, Qian Li, Xiao-Wei Wang, Shu-Sheng Liu BMC Genomics 2013, 14:401 (17 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

The acute transcriptional response of the coral Acropora millepora to immune challenge: expression of GiMAP/IAN genes links the innate immune responses of corals with those of mammals and plants

Yvonne Weiss, Sylvain Forêt, David C Hayward, Tracy Ainsworth, Rob King, Eldon E Ball, David J Miller BMC Genomics 2013, 14:400 (14 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Genome-wide analysis of intraspecific transposon diversity in yeast

Claudine Bleykasten-Grosshans, Anne Friedrich, Joseph Schacherer BMC Genomics 2013, 14:399 (14 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Large scale variation in DNA copy number in chicken breeds

Richard PMA Crooijmans, Mark S Fife, Tomas W Fitzgerald, Shurnevia Strickland, Hans H Cheng, Pete Kaiser, Richard Redon, Martien AM Groenen BMC Genomics 2013, 14:398 (13 June 2013)

Abstract | Provisional PDF | PubMed

Software   Open Access

Web-based visual analysis for high-throughput genomics

Jeremy Goecks, Carl Eberhard, Tomithy Too, Anton Nekrutenko, James Taylor BMC Genomics 2013, 14:397 (13 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Transcriptome analysis reveals unique C4-like photosynthesis and oil body formation in an arachidonic acid-rich microalga Myrmecia incisa Reisigl H4301

Long-Ling Ouyang, Si-Hong Chen, Yan Li, Zhi-Gang Zhou BMC Genomics 2013, 14:396 (13 June 2013)

Abstract | Full text | PDF | PubMed

Research article   Open Access

A genome-wide integrative study of microRNAs in human liver

Eric R Gamazon, Federico Innocenti, Rongrong Wei, Libo Wang, Min Zhang, Snezana Mirkov, Jacqueline Ramírez, R Stephanie Huang, Nancy J Cox, Mark J Ratain, Wanqing Liu BMC Genomics 2013, 14:395 (13 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

The genesis of an exceptionally lethal venom in the timber rattlesnake (Crotalus horridus) revealed through comparative venom-gland transcriptomics

Darin R Rokyta, Kenneth P Wray, Mark J Margres BMC Genomics 2013, 14:394 (12 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Novel genomic approaches unravel genetic architecture of complex traits in apple

Satish Kumar, Dorian J Garrick, Marco CAM Bink, Claire Whitworth, David Chagné, Richard K Volz BMC Genomics 2013, 14:393 (12 June 2013)

Abstract | Full text | PDF | PubMed

Research article   Open Access

Identification and analysis of MKK and MPK gene families in canola (Brassica napus L.)

Wanwan Liang, Bo Yang, Bao-Jun Yu, Zili Zhou, Cui Li, Ming Jia, Yun Sun, Yue Zhang, Feifei Wu, Hanfeng Zhang, Boya Wang, Michael K Deyholos, Yuan-Qing Jiang BMC Genomics 2013, 14:392 (11 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Archaeal nucleosome positioning in vivo and in vitro is directed by primary sequence motifs

Narasimharao Nalabothula, Liqun Xi, Sucharita Bhattacharyya, Jonathan Widom, Ji-Ping Wang, John N Reeve, Thomas J Santangelo, Yvonne N Fondufe-Mittendorf BMC Genomics 2013, 14:391 (10 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

Pyrosequencing analysis of the human microbiota of healthy Chinese undergraduates

Zongxin Ling, Xia Liu, Yueqiu Luo, Li Yuan, Karen E Nelson, Yuezhu Wang, Charlie Xiang, Lanjuan Li BMC Genomics 2013, 14:390 (10 June 2013)

Abstract | Full text | PDF | PubMed

Research article   Open Access

Skin transcriptome profiles associated with coat color in sheep

Ruiwen Fan, Jianshan Xie, Junming Bai, Haidong Wang, Xue Tian, Rui Bai, Xiaoyun Jia, Lei Yang, Yunfei Song, Muren Herrid, Wenjun Gao, Xiaoyan He, Jianbo Yao, George W Smith, Changsheng Dong BMC Genomics 2013, 14:389 (10 June 2013)

Abstract | Provisional PDF | PubMed

Research article   Open Access

An integrated genetic linkage map for white clover (Trifolium repens L.) with alignment to Medicago

Andrew G Griffiths, Brent A Barrett, Deborah Simon, Anar K Khan, Paul Bickerstaff, Craig B Anderson, Benjamin K Franzmayr, Kerry R Hancock, Chris S Jones BMC Genomics 2013, 14:388 (10 June 2013)

Abstract | Provisional PDF | PubMed

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