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BMC Genomics

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Editor-in-Chief
Melissa Norton, MD

Biology Editor
Penelope Webb, PhD

In-house Editor
Matthew Kaiser PhD



BMC  BMC Genomics, Volume 10


Database
Hmrbase: a database of hormones and their receptors
Mamoon Rashid, Deepak Singla, Arun Sharma, Manish Kumar, Gajendra PS Raghava
BMC Genomics 2009, 10:307 (9July2009)
[Abstract] [Provisional PDF]

Research article
Exploring temporal transcription regulation structure of Aspergillus fumigatus in heat shock by state space model
Jin Hwan Do, Rui Yamaguchi, Satoru Miyano
BMC Genomics 2009, 10:306 (8July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Coordinated patterns of gene expression for adult muscle build-up in transgenic mice expressing myostatin propeptide
Baoping Zhao, Eileena J Li, Robert J Wall, Jinzeng Yang
BMC Genomics 2009, 10:305 (8July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Genome-wide analysis of interactions between ATP-dependent chromatin remodeling and histone modifications
Zhiming Dai, Xianhua Dai, Qian Xiang, Jihua Feng, Jiang Wang, Yangyang Deng, Caisheng He
BMC Genomics 2009, 10:304 (8July2009)
[Abstract] [Provisional PDF]

Research article
Expressional dynamics of minisatellite 33.15 tagged spermatozoal transcriptome in Bubalus bubalis
Jyoti Srivastava, Sanjay Premi, Sudhir Kumar, Sher Ali
BMC Genomics 2009, 10:303 (7July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens
Paul Wilkinson, Nicholas R Waterfield, Lisa Crossman, Craig Corton, Maria Sanchez-Contreras, Isabella Vlisidou, Andrew Barron, Alexandra Bignell, Louise Clark, Jon Doggett, Douglas Ormond, Matthew Mayho, Nathalie Bason, Frances Smith, Mark Simmonds, Claire Arrowsmith, Carol Churcher, David Harris, Nicholas R Thompson, Michael Quail, Julian Parkhill, Richard H ffrench-Constant
BMC Genomics 2009, 10:302 (7July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Systemic treatment of xenografts with vaccinia virus GLV-1h68 reveals the immunologic facet of oncolytic therapy
Andrea Worschech, Nanhai Chen, Yong A Yu, Qian Zhang, Zoltan Pos, Stephanie Weibel, Viktoria Raab, Marianna Sabatino, Alessandro Monaco, Hui Liu, Vladia Monsurro, R MARK Buller, David F Stroncek, Ena Wang, Aladar A Szalay, Francesco M Marincola
BMC Genomics 2009, 10:301 (7July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Analysis of expression in the Anopheles gambiae developing testes reveals rapidly evolving lineage-specific genes in mosquitoes
Elzbieta Krzywinska, Jaroslaw Krzywinski
BMC Genomics 2009, 10:300 (6July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Methodology article
Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing
Julio C Vega-Arreguin, Enrique Ibarra-Laclette, Beatriz Jimenez-Moraila, Octavio Martinez, Jean Philippe Vielle-Calzada, Luis Herrera-Estrella, Alfredo Herrera-Estrella
BMC Genomics 2009, 10:299 (6July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Whole genome expression analysis within the angiotensin II-apolipoprotein E deficient mouse model of abdominal aortic aneurysm
Catherine Rush, Moses Nyara, Joseph V Moxon, Alexandra Trollope, Bradford Cullen, Jonathan Golledge
BMC Genomics 2009, 10:298 (6July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Methodology article
Genome-wide scans using archived neonatal dried blood spot samples
Mads V Hollegaard, Jonas Grauholm, Anders Borglum, Mette Nyegaard, Bent Norgaard-Pedersen, Torben Orntoft, Preben B Mortensen, Carsten Wiuf, Ole Mors, Michael Didriksen, Poul Thorsen, David M Hougaard
BMC Genomics 2009, 10:297 (4July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex
Galeb S Abu-Ali, David W Lacher, Lukas M Wick, Weihong Qi, Thomas S Whittam
BMC Genomics 2009, 10:296 (3July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Gene expression profiling via LongSAGE in a non-model plant species: a case study in seeds of Brassica napus
Christian Obermeier, Bashir Hosseini, Wolfgang Friedt, Rod Snowdon
BMC Genomics 2009, 10:295 (3July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Differential expression proteomics to investigate responses and resistance to Orobanche crenata in Medicago truncatula
Ma Angeles Castillejo, Ana M. Maldonado, Eliane Dumas-Gaudot, Monica Fernandez-Aparicio, Rafael Susin, Diego Rubiales, Jesus V. Jorrin
BMC Genomics 2009, 10:294 (3July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
A BAC-based physical map of the Hessian fly genome anchored to polytene chromosomes
Rajat Aggarwal, Thiago R Bennati, Navdeep Gill, Chaoyang Zhao, Ming-Shun Chen, John P Fellers, Brandon J Schemerhorn, Jeff J Stuart
BMC Genomics 2009, 10:293 (2July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Disorders of sex development expose transcriptional autonomy of genetic sex and androgen-programmed hormonal sex in human blood leukocytes
Paul-Martin Holterhus, Jan-Hendrik Bebermeier, Ralf Werner, Janos Demeter, Annette Richter-Unruh, Gunnar Cario, Mahesh Appari, Reiner Siebert, Felix Riepe, James D Brooks, Olaf Hiort
BMC Genomics 2009, 10:292 (1July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Comprehensive identification of essential Staphylococcus aureus genes using Transposon-Mediated Differential Hybridisation (TMDH)
Roy R Chaudhuri, Andrew G Allen, Paul J Owen, Gil Shalom, Karl Stone, Marcus Harrison, Timothy A Burgis, Michael Lockyer, Jorge Garcia-Lara, Simon J Foster, Stephen J Pleasance, Sarah E Peters, Duncan J Maskell, Ian G Charles
BMC Genomics 2009, 10:291 (1July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Transcriptome analysis of the venom gland of the scorpion Scorpiops jendeki: implication for the evolution of the scorpion venom arsenal
Yibao Ma, Ruiming Zhao, Yawen He, Songryong Li, Jun Liu, Yingliang Wu, Zhijian Cao, Wenxin Li
BMC Genomics 2009, 10:290 (1July2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
cDNA-AFLP analysis reveals differential gene expression in compatible interaction of wheat challenged with Puccinia striiformis f. sp. tritici
Xiaojie Wang, Chunlei Tang, Gang Zhang, Yingchun Li, Chenfang Wang, Bo Liu, Zhipeng Qu, Jie Zhao, Qingmei Han, Lili Huang, Xianming Chen, Kang Zhensheng
BMC Genomics 2009, 10:289 (30June2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression.
Stefanie De Bodt, Sebastian Proost, Klaas Vandepoele, Pierre Rouze, Yves Van de Peer
BMC Genomics 2009, 10:288 (29June2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

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