Supplements
Editor-in-Chief Melissa Norton, MD
Biology Editor Penelope Webb, PhD
In-house Editor Matthew Kaiser PhD
BMC Genomics publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 9 Suppl 1
The 2007 International Conference on Bioinformatics & Computational Biology (BIOCOMP'07)
Research
from The 2007 International Conference on Bioinformatics & Computational Biology (BIOCOMP'07)
Las Vegas, NV, USA. 25-28 June 2007
Edited by Jack Y Jang, Mary Qu Yang, Mengxia (Michelle) Zhu, Youping Deng and Hamid R Arabnia
Research
Promoting synergistic research and education in genomics and bioinformatics Jack Y Yang, Mary Qu Yang, Mengxia (Michelle) Zhu, Hamid R Arabnia, Youping Deng BMC Genomics 2008, 9 (Suppl 1):I1 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners Christopher J Oldfield, Jingwei Meng, Jack Y Yang, Mary Qu Yang, Vladimir N Uversky, A Keith Dunker BMC Genomics 2008, 9 (Suppl 1):S1 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Prediction-based approaches to characterize bidirectional promoters in the mammalian genome Mary Qu Yang, Laura L Elnitski BMC Genomics 2008, 9 (Suppl 1):S2 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Improving prediction accuracy of tumor classification by reusing genes discarded during gene selection Jack Y Yang, Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Youping Deng BMC Genomics 2008, 9 (Suppl 1):S3 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Bayesian biclustering of gene expression data Jiajun Gu, Jun S Liu BMC Genomics 2008, 9 (Suppl 1):S4 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Transcription network construction for large-scale microarray datasets using a high-performance computing approach Mengxia (Michelle) Zhu, Qishi Wu BMC Genomics 2008, 9 (Suppl 1):S5 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Supervised learning-based tagSNP selection for genome-wide disease classifications Qingzhong Liu, Jack Yang, Zhongxue Chen, Mary Qu Yang, Andrew H Sung, Xudong Huang BMC Genomics 2008, 9 (Suppl 1):S6 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Investigation of transmembrane proteins using a computational approach Jack Y Yang, Mary Qu Yang, A Keith Dunker, Youping Deng, Xudong Huang BMC Genomics 2008, 9 (Suppl 1):S7 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
HMMEditor: a visual editing tool for profile hidden Markov model Jianyong Dai, Jianlin Cheng BMC Genomics 2008, 9 (Suppl 1):S8 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Protein disorder prediction at multiple levels of sensitivity and specificity Joshua Hecker, Jack Y Yang, Jianlin Cheng BMC Genomics 2008, 9 (Suppl 1):S9 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Semantically linking and browsing PubMed abstracts with gene ontology Bhanu C Vanteru, Jahangheer S Shaik, Mohammed Yeasin BMC Genomics 2008, 9 (Suppl 1):S10 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response Yunfeng Yang, Daniel P Harris, Feng Luo, Liyou Wu, Andrea B Parsons, Anthony V Palumbo, Jizhong Zhou BMC Genomics 2008, 9 (Suppl 1):S11 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer Min Xu, Ming-Chih J Kao, Juan Nunez-Iglesias, Joseph R Nevins, Mike West, Xianghong Jasmine Zhou BMC Genomics 2008, 9 (Suppl 1):S12 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
A comparative study of different machine learning methods on microarray gene expression data Mehdi Pirooznia, Jack Y Yang, Mary Qu Yang, Youping Deng BMC Genomics 2008, 9 (Suppl 1):S13 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Transcriptome profiling of Saccharomyces cerevisiae mutants lacking C2H2 zinc finger proteins Jinghe Mao, Tanwir Habib, Ming Shenwu, Baobin Kang, Wilbur Allen, LaShonda Robertson, Jack Y Yang, Youping Deng BMC Genomics 2008, 9 (Suppl 1):S14 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Transcriptomic analysis of RDX and TNT interactive sublethal effects in the earthworm Eisenia fetida Ping Gong, Xin Guan, Laura S Inouye, Youping Deng, Mehdi Pirooznia, Edward J Perkins BMC Genomics 2008, 9 (Suppl 1):S15 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Supervised learning method for the prediction of subcellular localization of proteins using amino acid and amino acid pair composition Tanwir Habib, Chaoyang Zhang, Jack Y Yang, Mary Qu Yang, Youping Deng BMC Genomics 2008, 9 (Suppl 1):S16 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Using RNase sequence specificity to refine the identification of RNA-protein binding regions Xin Wang, Guohua Wang, Changyu Shen, Lang Li, Xinguo Wang, Sean D Mooney, Howard J Edenberg, Jeremy R Sanford, Yunlong Liu BMC Genomics 2008, 9 (Suppl 1):S17 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Selection of thermodynamic models for combinatorial control of multiple transcription factors in early differentiation of embryonic stem cells Chieh-Chun Chen, Xin-Guang Zhu, Sheng Zhong BMC Genomics 2008, 9 (Suppl 1):S18 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Identification of transcription factor and microRNA binding sites in responsible to fetal alcohol syndrome Guohua Wang, Xin Wang, Yadong Wang, Jack Y Yang, Lang Li, Kenneth P Nephew, Howard J Edenberg, Feng C Zhou, Yunlong Liu BMC Genomics 2008, 9 (Suppl 1):S19 (20 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
