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Editor-in-Chief
Melissa Norton, MD Biology Editor
Penelope Webb, PhD In-house Editor
Matthew Kaiser PhD
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Volume 10 Suppl 2
Proceedings
Starkville, MS, USA. 19 22 May 2008
Volume 10 Suppl 1
Research
Las Vegas, NV, USA. 1417 July 2008
more supplements 
Research article
 
Novel motifs distinguish multiple homologues of Polycomb in vertebrates: expansion and diversification of the epigenetic toolkit
Ramamoorthy Senthilkumar, Rakesh K Mishra
BMC Genomics 2009, 10:549 (20November2009)
[Abstract] [Provisional PDF]
Research article
Characterisation of microRNA expression in post-natal mouse mammary gland development
Stefanie Avril-Sassen, Leonard D Goldstein, John Stingl, Cherie Blenkiron, John Le Quesne, Inmaculada Spiteri, Konstantina Karagavriilidou, Christine J Watson, Simon Tavare, Eric A Miska, Carlos Caldas
BMC Genomics 2009, 10:548 (20November2009)
[Abstract] [Provisional PDF]
Methodology article
De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley
Burkhard Steuernagel, Stefan Taudien, Heidrun Gundlach, Michael Seidel, Ruvini Ariyadasa, Daniela Schulte, Andreas Petzold, Marius Felder, Andreas Graner, Uwe Scholz, Klaus FX Mayer, Matthias Platzer, Nils Stein
BMC Genomics 2009, 10:547 (20November2009)
[Abstract] [Provisional PDF]
Research article
Expression profiling of rainbow trout testis development identifies evolutionary conserved genes involved in spermatogenesis
Antoine D Rolland, Jean-Jacques Lareyre, Anne-Sophie Goupil, Jerome Monfort, Marie-Jose Ricordel, Diane Esquerre, Karine Hugot, Remi Houlgatte, Frederic Chalmel, Florence F Le Gac
BMC Genomics 2009, 10:546 (20November2009)
[Abstract] [Provisional PDF]
Research article
Ligand-specific sequential regulation of transcription factors for differentiation of MCF-7 cells
Yuko Saeki, Takaho Endo, Kaori Ide, Takeshi Nagashima, Noriko Yumoto, Tetsuro Toyoda, Harukazu Suzuki, Yoshihide Hayashizaki, Yoshiyuki Sakaki, Mariko Okada-Hatakeyama
BMC Genomics 2009, 10:545 (20November2009)
[Abstract] [Provisional PDF]
Research article
Differentially expressed genes for aggressive pecking behaviour in laying hens
Bart Buitenhuis, Jakob Hedgaard, Luc Janss, Peter Sorensen
BMC Genomics 2009, 10:544 (19November2009)
[Abstract] [Provisional PDF]
Research article
A transcriptome analysis identifies molecular effectors of unconjugated bilirubin in human neuroblastoma SH-SY5Y cells
Raffaella Calligaris, Cristina Bellarosa, Rossana Foti, Paola Roncaglia, Pablo Giraudi, Helena Krmac, Claudio Tiribelli, Stefano Gustincich
BMC Genomics 2009, 10:543 (19November2009)
[Abstract] [Provisional PDF]
Research article
Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPAR-gamma signaling as potential mechanism for the negative relationships between immune response and lipid metabolism
Kasey M Moyes, James K Drackley, Dawn E Morin, Massimo Bionaz, Sandra L Rodriguez-Zas, Robin E Everts, Harris A Lewin, Juan J Loor
BMC Genomics 2009, 10:542 (19November2009)
[Abstract] [Provisional PDF]
Correction
Correction: Digital PCR provides sensitive and absolute calibration for high throughput sequencing
Richard A White III, Paul C Blainey, H Christina Fan, Stephen R Quake
BMC Genomics 2009, 10:541 (19November2009)
[Abstract] [Provisional PDF]
Research article
Comparative transcripts profiling reveals new insight into molecular processes regulating lycopene accumulation in a sweet orange (Citrus sinensis) red-flesh mutant
Qiang Xu, Keqin Yu, Andan Zhu, Junli Ye, Qing Liu, Jianchen Zhang, Xiuxin Deng
BMC Genomics 2009, 10:540 (18November2009)
[Abstract] [Provisional PDF]
Research article
Complexity of genome evolution by segmental rearrangement in Brassica rapa revealed by sequence-level analysis
Martin Trick, Soo-Jin Kwon, Su Ryun Choi, Fiona Fraser, Eleni Soumpourou, Nizar Drou, Zhi Wang, Seo Yeon Lee, Tae-Jin Yang, Jeong-Hwan Mun, Andrew H Paterson, Christopher D Town, J CHRIS Pires, Yong Pyo Lim, Beom-Seok Park, Ian Bancroft
BMC Genomics 2009, 10:539 (18November2009)
[Abstract] [Provisional PDF]
Research article
The isochore patterns of invertebrate genomes
Rosalia Cammarano, Maria Costantini, Giorgio Bernardi
BMC Genomics 2009, 10:538 (18November2009)
[Abstract] [Provisional PDF]
Research article
Adaptation of the short intergenic spacers between co-directional genes to the Shine-Dalgarno motif among prokaryote genomes
Albert Palleja, Santiago Garcia-Vallve, Antoni Romeu
BMC Genomics 2009, 10:537 (18November2009)
[Abstract] [Provisional PDF]
Research article
Horizontal gene transfer and diverse functional constrains within a common replication-partitioning system in Alphaproteobacteria: the repABC operon
Santiago Castillo-Ramirez, Jorge F Vazquez-Castellanos, Victor Gonzalez, Miguel A Cevallos
BMC Genomics 2009, 10:536 (18November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Methodology article
Identification of genes associated with multiple cancers via
integrative analysis
Shuangge Ma, Jian Huang, Meena S Moran
BMC Genomics 2009, 10:535 (17November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny
Tiratha Raj Singh, Georgia Tsagkogeorga, Frederic Delsuc, Samuel Blanquart, Noa Shenkar, Yossi Loya, Emmanuel JP Douzery, Dorothee Huchon
BMC Genomics 2009, 10:534 (17November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Eurotatorian paraphyly: Revisiting phylogenetic relationships based on the complete mitochondrial genome sequence of Rotaria rotatoria (Bdelloidea: Rotifera: Syndermata)
Gi-Sik Min, Joong-Ki Park
BMC Genomics 2009, 10:533 (17November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Expression profiling of repetitive elements by melting temperature analysis: variation in HERV-W gag expression across human individuals and tissues
Christoffer Nell ker, Fang Li, Fredrik Uhrzander, Joanna Tyrcha, Hkan Karlsson
BMC Genomics 2009, 10:532 (17November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer
Yan W Asmann, Eric W Klee, E AUBREY Thompson, Edith A Perez, Sumit Middha, Ann L Oberg, Terry M Therneau, David I Smith, Gregory A Poland, Eric D Wieben, Jean-Pierre A Kocher
BMC Genomics 2009, 10:531 (16November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Alu repeats increase local recombination rates
David J Witherspoon, W SCOTT Watkins, Yuhua Zhang, Jinchuan Xing, Whitney L Tolpinrud, Dale J Hedges, Mark A Batzer, Lynn B Jorde
BMC Genomics 2009, 10:530 (16November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Database
GExplore: a web server for integrated queries of protein domains, gene expression and mutant phenotypes
Harald Hutter, Man-Ping Ng, Nansheng Chen
BMC Genomics 2009, 10:529 (16November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
U3 snoRNA genes are multi-copy and frequently linked to U5 snRNA genes in Euglena gracilis
J. MICHAEL Charette, Michael W. Gray
BMC Genomics 2009, 10:528 (16November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Target gene approaches: Gene expression in Daphnia magna exposed to predator-borne kairomones or to microcystin-producing and microcystin-free Microcystis aeruginosa
Anke Schwarzenberger, Cornelius Courts, Eric Von Elert
BMC Genomics 2009, 10:527 (16November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Detection of pathogenic copy number variants in children with idiopathic intellectual disability using 500K SNP array genomic hybridization
J M Friedman, Shelin Adam, Laura Arbour, Linlea Armstrong, Agnes Baross, Patricia Birch, Cornelius Boerkoel, Susanna Chan, David Chai, Allen D Delaney, Stephane Flibotte, William T Gibson, Sylvie Langlois, Emmanuelle Lemyre, H IRENE Li, Patrick MacLeod, Joan Mathers, Jacques L Michaud, Barbara C McGillivray, Millan S Patel, Hong Qian, Guy A Rouleau, Margot I Van Allen, Siu-Li Yong, Farah R Zahir, Patrice Eydoux, Marco A Marra
BMC Genomics 2009, 10:526 (16November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Analysis of expressed sequence tags and identification of genes encoding cell-wall-degrading enzymes from the fungivorous nematode Aphelenchus avenae
Nurul Karim, John T Jones, Hiroaki Okada, Taisei Kikuchi
BMC Genomics 2009, 10:525 (16November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
A genome-wide deletion mutant screen identifies pathways affected by nickel sulfate in Saccharomyces cerevisiae
Adriana Arita, Xue Zhou, Thomas P Ellen, Xin Liu, Jingxiang Bai, John P Rooney, Adrienne Kurtz, Catherine B Klein, Wei Dai, Thomas J Begley, Max Costa
BMC Genomics 2009, 10:524 (15November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.)
Rajeev K Varshney, Pavana J Hiremath, Pazhamala Lekha, Junichi Kashiwagi, Jayashree Balaji, Amit A Deokar, Vincent Vadez, Yongli Xiao, Ramamurthy Srinivasan, Pooran M Gaur, Kadambot HM Siddique, Christopher D Town, David A Hoisington
BMC Genomics 2009, 10:523 (15November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Methodology article
New methods to analyse microarray data that partially lack a reference signal
Neeltje Carpaij, Ad C Fluit, Jodi A Lindsay, Marc JM Bonten, Rob JL Willems
BMC Genomics 2009, 10:522 (13November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Correlation of microsynteny conservation and disease gene distribution in mammalian genomes
Simon C Lovell, Xiting Li, Nimmi R Weerasinghe, Kathryn E Hentges
BMC Genomics 2009, 10:521 (12November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
The effect of sequencing errors on metagenomic gene prediction
Katharina J Hoff
BMC Genomics 2009, 10:520 (12November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Methodology article
Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation
Kevin CH Ha, Jasmin Coulombe-Huntington, Jacek Majewski
BMC Genomics 2009, 10:519 (12November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Discovery of novel human transcript variants by analysis of intronic single-block EST with polyadenylation site
Pingzhang Wang, Peng Yu, Peng Gao, Taiping Shi, Dalong Ma
BMC Genomics 2009, 10:518 (12November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Database
An expression database for roots of the model legume Medicago truncatula under salt stress
Daofeng Li, Zhen Su, Jiangli Dong, Tao Wang
BMC Genomics 2009, 10:517 (11November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Endogenous control genes in complex vascular tissue samples
Lasse Folkersen, Sanela Kurtovic, Anton Razuvaev, Hanna E Agardh, Anders Gabrielsen, Gabrielle Paulsson-Berne
BMC Genomics 2009, 10:516 (10November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
SnoRNAs from the filamentous fungus Neurospora crassa: structural, functional and evolutionary insights
Na Liu, Zhen-Dong Xiao, Chun-Hong Yu, Peng Shao, Yin-Tong Liang, Dao-Gang Guan, Jian-Hua Yang, Chun-Long Chen, Liang-Hu Qu, Hui Zhou
BMC Genomics 2009, 10:515 (8November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus
Rob M de Graaf, Theo A van Alen, Bas E Dutilh, Jan WP Kuiper, Hanneke JAA van Zoggel, Minh Bao Huynh, Hans-Dieter G rtz, Martijn A Huynen, Johannes HP Hackstein
BMC Genomics 2009, 10:514 (6November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Evolution of genomic sequence inhomogeneity at mid-range scales
Ashwin Prakash, Samuel S Shepard, Jie He, Benjamin Hart, Miao Chen, Surya P Amarachintha, Olga Mileyeva-Biebesheimer, Jason Bechtel, Alexei Fedorov
BMC Genomics 2009, 10:513 (5November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
Ying Wang, Vinayak Brahmakshatriya, Huifeng Zhu, Blanca Lupiani, Sanjay M Reddy, Byung-Jun Yoon, Preethi H Gunaratne, Jong Hwan Kim, Rui Chen, Junjun Wang, Huaijun Zhou
BMC Genomics 2009, 10:512 (5November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Comparative proteomic analysis of malformed umbilical cords from somatic cell nuclear transfer-derived piglets: implications for early postnatal death
Jong-Yi Park, Jae-Hwan Kim, Yun-Jung Choi, Kyu-Chan Hwang, Seong-Keun Cho, Ho-Hyun Park, Seung-Sam Paik, Teoan Kim, ChanKyu Park, Hoon Taek Lee, Han Geuk Seo, Soo-Bong Park, Seongsoo Hwang, Jin-Hoi Kim
BMC Genomics 2009, 10:511 (5November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Comparative analysis of plant genomes allows the definition of the "Phytolongins": a novel non-SNARE longin domain protein family
Marco Vedovato, Valeria Rossi, Joel B Dacks, Francesco Filippini
BMC Genomics 2009, 10:510 (4November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Methodology article
Information-theoretic gene-gene and gene-environment interaction analysis of quantitative traits
Pritam Chanda, Lara Sucheston, Song Liu, Aidong Zhang, Murali Ramanathan
BMC Genomics 2009, 10:509 (4November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Computational prediction of splicing regulatory elements shared by Tetrapoda organisms
Alexander Churbanov, Igor Vo echovsk , Chindo Hicks
BMC Genomics 2009, 10:508 (4November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Regulation of intestinal epithelial cells transcriptome by enteric glial cells: impact on intestinal epithelial barrier functions
Laurianne Van Landeghem, Maxime M Mah , Raluca Teusan, Jean Lger, Isabelle Guisle, Rmi Houlgatte, Michel Neunlist
BMC Genomics 2009, 10:507 (2November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Phylogenetic relatedness and host plant growth form influence gene expression of the polyphagous comma butterfly (Polygonia c-album)
Hanna M Heidel-Fischer, Dalial Freitak, Niklas Janz, Lina Sderlind, Heiko Vogel, Sren Nylin
BMC Genomics 2009, 10:506 (31October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Cell wall biogenesis of Arabidopsis thaliana elongating cells: transcriptomics complements proteomics
Elisabeth Jamet, David Roujol, Hl ne San-Clemente, Muhammad Irshad, Ludivine Soubigou-Taconnat, Jean-Pierre Renou, Rafael Pont-Lezica
BMC Genomics 2009, 10:505 (31October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
EST and microarray analysis of horn development in Onthophagus beetles
Teiya Kijimoto, James Costello, Zuojian Tang, Armin P Moczek, Justen Andrews
BMC Genomics 2009, 10:504 (30October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Hepatic gene expression profiling reveals protective responses in Atlantic salmon vaccinated against furunculosis
Stanko  kugor, Sven Martin J rgensen, Bjarne Gjerde, Aleksei Krasnov
BMC Genomics 2009, 10:503 (30October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Characterization of full-length sequenced cDNA inserts (FLIcs) from Atlantic salmon (Salmo salar)
Rune Andreassen, Sigbjrn Lunner, Bjrn Hyheim
BMC Genomics 2009, 10:502 (30October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Steps toward broad-spectrum therapeutics: discovering virulence-associated genes present in diverse human pathogens
Chris J Stubben, Melanie L Duffield, Ian A Cooper, Donna C Ford, Jason D Gans, Andrey V Karlyshev, Bryan Lingard, Petra CF Oyston, Anna de Rochefort, Jian Song, Brendan W Wren, Rick W Titball, Murray Wolinsky
BMC Genomics 2009, 10:501 (29October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Annotation, phylogenetics, and expression of the nuclear receptors in Daphnia pulex
Susanne A Thomson, William S Baldwin, Ying H Wang, Gwijun Kwon, Gerald A LeBlanc
BMC Genomics 2009, 10:500 (28October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Anti-proliferative action of vitamin D in MCF7 is still active after siRNA-VDR knock-down
Jos L Costa, Paul P Eijk, Mark A van de Wiel, Derk ten Berge, Fernando Schmitt, Carmen J Narvaez, JoEllen Welsh, Bauke Ylstra
BMC Genomics 2009, 10:499 (28October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Inherent promoter bidirectionality facilitates maintenance of sequence integrity and transcription of parasitic DNA in mammalian genomes
Paul Kalitsis, Richard Saffery
BMC Genomics 2009, 10:498 (27October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
A functional analysis of the CREB signaling pathway using HaloCHIP-chip and high throughput reporter assays
Danette D Hartzell, Nathan D Trinklein, Jacqui Mendez, Nancy Murphy, Shelley F Aldred, Keith Wood, Marjeta Urh
BMC Genomics 2009, 10:497 (27October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat
Yong Q Gu, Yaqin Ma, Naxin Huo, John P Vogel, Frank M You, Gerard R Lazo, William M Nelson, Carol Soderlund, Jan Dvorak, Olin D Anderson, Ming-Cheng Luo
BMC Genomics 2009, 10:496 (27October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons
Rafael Queiroz, Corinna Benz, Kurt Fellenberg, Jrg D Hoheisel, Christine Clayton
BMC Genomics 2009, 10:495 (26October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Exploring the molecular basis of insecticide resistance in the dengue vector Aedes aegypti: a case study in Martinique Island (French West Indies)
Sbastien Marcombe, Rodolphe Poupardin, Frederic Darriet, Stphane Reynaud, Julien Bonnet, Clare Strode, Cecile Brengues, Andr Ybakima, Hilary Ranson, Vincent Corbel, Jean-Philippe David
BMC Genomics 2009, 10:494 (26October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Quality control in microarray assessment of gene expression in human airway epithelium
Tina Raman, Timothy P O'Connor, Neil R Hackett, Wei Wang, Ben-Gary Harvey, Marc A Attiyeh, David T Dang, Matthew Teater, Ronald G Crystal
BMC Genomics 2009, 10:493 (24October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Expulsion of Trichuris muris is associated with increased expression of angiogenin 4 in the gut and increased acidity of mucins within the goblet cell
Riccardo D'Elia, Matthew L deSchoolmeester, Leo AH Zeef, Steven H Wright, Alan D Pemberton, Kathryn J Else
BMC Genomics 2009, 10:492 (24October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Whole-genome analysis of pseudorabies virus gene expression by real-time quantitative RT-PCR assay
D ra Tomb cz, Judit S Tth, Pl Petrovszki, Zsolt Boldogk i
BMC Genomics 2009, 10:491 (23October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Methodology article
A new procedure for determining the genetic basis of a physiological process in a non-model species, illustrated by cold induced angiogenesis in the carp
John MJ Herbert, Francesca M Buffa, Henrik Vorschmitt, Stuart Egginton, Roy Bicknell
BMC Genomics 2009, 10:490 (23October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Identification and analysis of serpin-family genes by homology and synteny across the 12 sequenced Drosophilid genomes
Matthew Garrett, Ane Fullaondo, Laurent Troxler, Gos Micklem, David Gubb
BMC Genomics 2009, 10:489 (22October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Analysis of regulatory protease sequences identified through bioinformatic data mining of the Schistosoma mansoni genome
David H Bos, Chris Mayfield, Dennis J Minchella
BMC Genomics 2009, 10:488 (21October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Analysis of genomic signatures in prokaryotes using multinomial regression and hierarchical clustering
Jon Bohlin, Eystein Skjerve, David W Ussery
BMC Genomics 2009, 10:487 (21October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Database
KAIKObase: An integrated silkworm genome database and data mining tool
Michihiko Shimomura, Hiroshi Minami, Yoshitaka Suetsugu, Hajime Ohyanagi, Chikatada Satoh, Baltazar Antonio, Yoshiaki Nagamura, Keiko Kadono-Okuda, Hideyuki Kajiwara, Hideki Sezutsu, Javaregowda Nagaraju, Marian R Goldsmith, Qingyou Xia, Kimiko Yamamoto, Kazuei Mita
BMC Genomics 2009, 10:486 (21October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
The theory of discovering rare variants via DNA sequencing
Michael C Wendl, Richard K Wilson
BMC Genomics 2009, 10:485 (20October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Are algal genes in nonphotosynthetic protists evidence of historical plastid endosymbioses?
John W Stiller, Jinling Huang, Qin Ding, Jing Tian, Carol Goodwillie
BMC Genomics 2009, 10:484 (20October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Glycogenome expression dynamics during mouse C2C12 myoblast differentiation suggests a sequential reorganization of membrane glycoconjugates
Mathilde Janot, Aymeric Audfray, Cline Loriol, Agns Germot, Abderrahman Maftah, Fabrice Dupuy
BMC Genomics 2009, 10:483 (20October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Widespread variation in transcript abundance within and across developmental stages of Trypanosoma brucei
Bryan C Jensen, Dhileep Sivam, Charles T Kifer, Peter J Myler, Marilyn Parsons
BMC Genomics 2009, 10:482 (19October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Characterization of the oxidative stress stimulon and PerR regulon of Campylobacter jejuni
Kiran Palyada, Yi-Qian Sun, Annika Flint, James Butcher, Hemant Naikare, Alain Stintzi
BMC Genomics 2009, 10:481 (18October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity
Yuen-Jong Liu, Deyou Zheng, Suganthi Balasubramanian, Nicholas Carriero, Ekta Khurana, Rebecca Robilotto, Mark B Gerstein
BMC Genomics 2009, 10:480 (16October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Methodology article
Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey
Hindrik HD Kerstens, Richard PMA Crooijmans, Albertine Veenendaal, Bert W Dibbits, Thomas FC Chin-A-Woeng, Johan T den Dunnen, Martien AM Groenen
BMC Genomics 2009, 10:479 (16October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Maternal high fat diet during pregnancy and lactation alters hepatic expression of insulin like growth factor-2 and key microRNAs in the adult offspring
Junlong Zhang, Fang Zhang, Xavier Didelot, Kimberley D Bruce, Felino R Cagampang, Manu Vatish, Mark Hanson, Hendrik Lehnert, Antonio Ceriello, Christopher D Byrne
BMC Genomics 2009, 10:478 (16October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Methodology article
Transposon-mediated BAC transgenesis in zebrafish and mice
Maximiliano L Suster, Kenta Sumiyama, Koichi Kawakami
BMC Genomics 2009, 10:477 (16October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Identification of novel androgen-responsive genes by sequencing of LongSAGE libraries
Tammy L Romanuik, Gang Wang, Robert A Holt, Steven JM Jones, Marco A Marra, Marianne D Sadar
BMC Genomics 2009, 10:476 (15October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Characterization of meiotic crossovers and gene conversion by whole-genome sequencing in Saccharomyces cerevisiae
Ji Qi, Asela J Wijeratne, Lynn P Tomsho, Yi Hu, Stephan C Schuster, Hong Ma
BMC Genomics 2009, 10:475 (15October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
The l1-l2 regularization framework unmasks the hypoxia signature hidden in the transcriptome of a set of heterogeneous neuroblastoma cell lines
Paolo Fardin, Annalisa Barla, Sofia Mosci, Lorenzo Rosasco, Alessandro Verri, Luigi Varesio
BMC Genomics 2009, 10:474 (15October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Development and mapping of DArT markers within the Festuca - Lolium complex
David Kopeck, Jan Barto , Adam J Lukaszewski, James H Baird, Vladim r  ernoch, Roland Klliker, Odd Arne Rognli, Helene Blois, Vanessa Caig, Thomas L bberstedt, Bruno Studer, Paul Shaw, Jaroslav Dole el, Andrzej Kilian
BMC Genomics 2009, 10:473 (15October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Epigenetic regulation of the honey bee transcriptome: unravelling the nature of methylated genes
Sylvain Foret, Robert Kucharski, Yvonne Pittelkow, Gabrielle A Lockett, Ryszard Maleszka
BMC Genomics 2009, 10:472 (14October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Methodology article
A comparative analysis of DNA barcode microarray feature size
Ron Ammar, Andrew M Smith, Lawrence E Heisler, Guri Giaever, Corey Nislow
BMC Genomics 2009, 10:471 (13October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
A subset of the diverse COG0523 family of putative metal chaperones is linked to zinc homeostasis in all kingdoms of life
Crysten E Haas, Dmitry A Rodionov, Janette Kropat, Davin Malasarn, Sabeeha S Merchant, Valrie de Crcy-Lagard
BMC Genomics 2009, 10:470 (12October2009)
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Frank Frster, Chuanguang Liang, Alexander Shkumatov, Daniela Beisser, Julia C Engelmann, Martina Schnlzer, Marcus Frohme, Tobias Mller, Ralph O Schill, Thomas Dandekar
BMC Genomics 2009, 10:469 (12October2009)
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Insertion sequence content reflects genome plasticity in strains of the root nodule actinobacterium Frankia
Derek M Bickhart, Johann P Gogarten, Pascal Lapierre, Louis S Tisa, Philippe Normand, David R Benson
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An oligo-based microarray offers novel transcriptomic approaches for the analysis of pathogen resistance and fruit quality traits in melon (Cucumis melo L.)
Albert Mascarell-Creus, Joaquin Ca izares, Josep Vilarrasa-Blasi, Santiago Mora-Garca, Jos Blanca, Daniel Gonzalez-Ibeas, Montserrat Saladi, Cristina Roig, Wim Deleu, Beln Pic-Silvent, Nuria Lpez-Bigas, Miguel A Aranda, Jordi Garcia-Mas, Fernando Nuez, Pere Puigdomnech, Ana I Cao-Delgado
BMC Genomics 2009, 10:467 (12October2009)
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Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding
Sung-Chur Sim, Matthew D Robbins, Charles Chilcott, Tong Zhu, David M Francis
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Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing
Wei Wang, Yejun Wang, Qing Zhang, Yan Qi, Dianjing Guo
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Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum
Claudia C Copeland, Manja Marz, Dominic Rose, Jana Hertel, Paul J Brindley, Clara Bermudez Santana, Stephanie Kehr, Camille Stephan-Otto Attolini, Peter F Stadler
BMC Genomics 2009, 10:464 (8October2009)
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The word landscape of the non-coding segments of the Arabidopsis thaliana genome
Jens Lichtenberg, Alper Yilmaz, Joshua D Welch, Kyle Kurz, Xiaoyu Liang, Frank Drews, Klaus Ecker, Stephen S Lee, Matt Geisler, Erich Grotewold, Lonnie R Welch
BMC Genomics 2009, 10:463 (8October2009)
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A first generation BAC-based physical map of the rainbow trout genome
Yniv Palti, Ming-Cheng Luo, Yuqin Hu, Carine Genet, Frank M You, Roger L Vallejo, Gary H Thorgaard, Paul A Wheeler, Caird E Rexroad III
BMC Genomics 2009, 10:462 (8October2009)
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Low oxygen levels as a trigger for enhancement of respiratory metabolism in Saccharomyces cerevisiae
Eija Rintala, Mervi Toivari, Juha-Pekka Pitk nen, Marilyn G Wiebe, Laura Ruohonen, Merja Penttil
BMC Genomics 2009, 10:461 (5October2009)
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'Bois noir' phytoplasma induces significant reprogramming of the leaf transcriptome in the field grown grapevine
Matja Hren, Petra Nikoli , Ana Rotter, Andrej Blejec, Nancy Terrier, Maja Ravnikar, Marina Dermastia, Kristina Gruden
BMC Genomics 2009, 10:460 (2October2009)
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Combined phylogeny and neighborhood analysis of the evolution of the ABC transporters conferring multiple drug resistance in hemiascomycete yeasts
Marie-Line Seret, Julie F Diffels, Andr Goffeau, Philippe V Baret
BMC Genomics 2009, 10:459 (1October2009)
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DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum
Hai-Chun Jing, Carlos Bayon, Kostya Kanyuka, Simon Berry, Peter Wenzl, Eric Huttner, Andrzej Kilian, Kim E Hammond-Kosack
BMC Genomics 2009, 10:458 (30September2009)
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Enrichment of a set of microRNAs during the cotton fiber development
Pieter Bas Kwak, Qin Qin Wang, Xu Sheng Chen, Cheng Xiang Qiu, Zhi Min Yang
BMC Genomics 2009, 10:457 (29September2009)
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Transcriptomic and proteomic analyses of seasonal photoperiodism in the pea aphid
G Le Trionnaire, F Francis, S Jaubert-Possamai, J Bonhomme, E De Pauw, J-P Gauthier, E Haubruge, F Legeai, N Prunier-Leterme, J-C Simon, S Tanguy, D Tagu
BMC Genomics 2009, 10:456 (29September2009)
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MicroRNA expression profiling during the life cycle of the silkworm (Bombyx mori)
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BMC Genomics 2009, 10:455 (28September2009)
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Ontology and diversity of transcript-associated microsatellites mined from a globe artichoke EST database
Davide Scaglione, Alberto Acquadro, Ezio Portis, Christopher A Taylor, Sergio Lanteri, Steven J Knapp
BMC Genomics 2009, 10:454 (28September2009)
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Quadruplex MAPH: improvement of throughput in high-resolution copy number screening
Jess Tyson, Tamsin MO Majerus, Susan Walker, John AL Armour
BMC Genomics 2009, 10:453 (28September2009)
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Comparative SNP diversity among four Eucalyptus species for genes from secondary metabolite biosynthetic pathways
Carsten Klheim, Suat Hui Yeoh, Jens Maintz, William J Foley, Gavin F Moran
BMC Genomics 2009, 10:452 (24September2009)
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Transcriptome analysis of the central nervous system of the mollusc Lymnaea stagnalis
Z-P Feng, Z Zhang, RE van Kesteren, VA Straub, P van Nierop, K Jin, N Nejatbakhsh, JI Goldberg, GE Spencer, MS Yeoman, W Wildering, JR Coorssen, RP Croll, LT Buck, NI Syed, AB Smit
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