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1.
934 Accesses
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Candidate gene association studies: a comprehensive guide to useful in silico tools
Radhika Patnala, Judith Clements, Jyotsna Batra BMC Genetics 2013, 14:39 (9 May 2013)
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Editor’s summary
A review of computational tools to select candidate genes for association studies provides a user-friendly guide to help identify disease-associated genetic variants, aimed particularly for use in the medical and cancer research communities.
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2.
771 Accesses
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Genome-wide association study for backfat thickness in Canchim beef cattle using Random Forest approach
Fabiana Mokry, Roberto Higa, Maurício de Alvarenga Mudadu, Andressa Oliveira de Lima, Sarah Laguna Meirelles, Marcos Vinicius Barbosa da Silva, Fernando Cardoso, Maurício Morgado de Oliveira, Ismael Urbinati, Simone Méo Niciura, Rymer Tullio, Maurício Mello de Alencar, Luciana Correia de Almeida Regitano BMC Genetics 2013, 14:47 (5 June 2013)
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3.
678 Accesses
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Characterization of a dopamine transporter polymorphism and behavior in Belgian Malinois
Lisa Lit, Janelle M Belanger, Debby Boehm, Nathan Lybarger, Anouck Haverbeke, Claire Diederich, Anita M Oberbauer BMC Genetics 2013, 14:45 (30 May 2013)
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4.
614 Accesses
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Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
Thibaut Jombart, Sébastien Devillard, François Balloux BMC Genetics 2010, 11:94 (15 October 2010)
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| PubMed | Cited on BioMed Central
| F1000 Biology
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Editor’s summary
A new multivariate method for the analysis of genetically structured populations, Discriminant Analysis of Principal Components (DAPC), is better able to characterize population subdivision, and performs faster, than current Bayesian clustering algorithms.
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5.
611 Accesses
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Reintroductions and genetic introgression from domestic pigs have shaped the genetic population structure of Northwest European wild boar
Daniel J Goedbloed, Pim van Hooft, Hendrik-Jan Megens, Katharina Langenbeck, Walburga Lutz, Richard PMA Crooijmans, Sip E van Wieren, Ron C Ydenberg, Herbert HT Prins BMC Genetics 2013, 14:43 (20 May 2013)
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6.
614 Accesses
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Molecular diversity and population structure at the Cytochrome P450 3A5 gene in Africa
Ripudaman K Bains, Mirna Kovacevic, Christopher A Plaster, Ayele Tarekegn, Endashaw Bekele, Neil N Bradman, Mark G Thomas BMC Genetics 2013, 14:34 (3 May 2013)
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Editor’s summary
Variability in the gene encoding the drug metabolizing enzyme Cytochrome P450 3A5 (CYP3A5) from 36 ethnically diverse populations in Africa reveals that 43% of individuals express this gene, consistent with it playing a role in salt-retention.
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7.
564 Accesses
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Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height
Yuri T Utsunomiya, Adriana S do Carmo, Roberto Carvalheiro, Haroldo HR Neves, Márcia C Matos, Ludmilla B Zavarez, Ana M Pérez O’Brien, Johann Sölkner, John C McEwan, John B Cole, Curtis P Van Tassell, Flávio S Schenkel, Marcos VGB da Silva, Laercio R Porto Neto, Tad S Sonstegard, José F Garcia BMC Genetics 2013, 14:52 (13 June 2013)
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8.
538 Accesses
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Assessment of clinical analytical sensitivity and specificity of next-generation sequencing for detection of simple and complex mutations
Ephrem LH Chin, Cristina da Silva, Madhuri Hegde BMC Genetics 2013, 14:6 (19 February 2013)
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9.
533 Accesses
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iXora: Exact haplotype inferencing and trait association
Filippo Utro, Niina Haiminen, Donald Livingstone, Omar E Cornejo, Stefan Royaert, Raymond J Schnell, Juan Carlos Motamayor, David N Kuhn, Laxmi Parida BMC Genetics 2013, 14:48 (6 June 2013)
Abstract | Provisional PDF
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10.
502 Accesses
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Genetic variation in polyploid forage grass: Assessing the molecular genetic variability in the Paspalum genus
Fernanda W Cidade, Bianca BZ Vigna, Francisco HD de Souza, José Francisco M Valls, Miguel Dall’Agnol, Maria I Zucchi, Tatiana T de Souza-Chies, Anete P Souza BMC Genetics 2013, 14:50 (8 June 2013)
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11.
464 Accesses
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Genome-wide linkage analysis of congenital heart defects using MOD score analysis identifies two novel loci
Antònia Flaquer, Clemens Baumbach, Estefania Piñero, Fernando García Algas, María de la Fuente Sanchez, Jordi Rosell, Jorge Toquero, Luis Alonso-Pulpon, Pablo Garcia-Pavia, Konstantin Strauch, Damian Heine-Suñer BMC Genetics 2013, 14:44 (24 May 2013)
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12.
461 Accesses
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Fine mapping of fatness QTL on porcine chromosome X and analyses of three positional candidate genes
Junwu Ma, Hélène Gilbert, Nathalie Iannuccelli, Yanyu Duan, Beili Guo, Weibing Huang, Huanban Ma, Juliette Riquet, Jean-Pierre Bidanel, Lusheng Huang, Denis Milan BMC Genetics 2013, 14:46 (1 June 2013)
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| PubMed
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13.
417 Accesses
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Discovery of single nucleotide polymorphisms in candidate genes associated with fertility and production traits in Holstein cattle
Sarah D Cochran, John B Cole, Daniel J Null, Peter J Hansen BMC Genetics 2013, 14:49 (7 June 2013)
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14.
362 Accesses
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Linking the potato genome to the conserved ortholog set (COS) markers
Hannele Lindqvist-Kreuze, Kwangsoo Cho, Leticia Portal, Flor Rodríguez, Reinhard Simon, Lukas A Mueller, David M Spooner, Meredith Bonierbale BMC Genetics 2013, 14:51 (8 June 2013)
Abstract | Provisional PDF
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15.
379 Accesses
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Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans
Mait Metspalu, Toomas Kivisild, Ene Metspalu, Jüri Parik, Georgi Hudjashov, Katrin Kaldma, Piia Serk, Monika Karmin, Doron M Behar, M Thomas P Gilbert, Phillip Endicott, Sarabjit Mastana, Surinder S Papiha, Karl Skorecki, Antonio Torroni, Richard Villems BMC Genetics 2004, 5:26 (31 August 2004)
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16.
365 Accesses
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Genetic determinants of hair and eye colours in the Scottish and Danish populations
Jonas Mengel-From, Terence H Wong, Niels Morling, Jonathan L Rees, Ian J Jackson BMC Genetics 2009, 10:88 (30 December 2009)
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Editor’s summary
Scottish and Danish populations are famed for being ‘redheads' and a study of 33 genes shows that red hair color is associated with polymorphisms in melanin pigmentation and albinism genes, such as MC1R.
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17.
347 Accesses
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Detecting negative selection on recurrent mutations using gene genealogy
Kiyoshi Ezawa, Giddy Landan, Dan Graur BMC Genetics 2013, 14:37 (7 May 2013)
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18.
319 Accesses
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Can DNA barcoding accurately discriminate megadiverse Neotropical freshwater fish fauna?
Luiz HG Pereira, Robert Hanner, Fausto Foresti, Claudio Oliveira BMC Genetics 2013, 14:20 (9 March 2013)
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19.
331 Accesses
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Stability of genomic imprinting in human induced pluripotent stem cells
Hitoshi Hiura, Masashi Toyoda, Hiroaki Okae, Masahiro Sakurai, Naoko Miyauchi, Akiko Sato, Nobutaka Kiyokawa, Hajime Okita, Yoshitaka Miyagawa, Hidenori Akutsu, Koichiro Nishino, Akihiro Umezawa, Takahiro Arima BMC Genetics 2013, 14:32 (30 April 2013)
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20.
306 Accesses
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CpGPAP: CpG island predictor analysis platform
Li-Yeh Chuang, Cheng-Huei Yang, Ming-Cheng Lin, Cheng-Hong Yang BMC Genetics 2012, 13:13 (2 March 2012)
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21.
281 Accesses
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Disentangling molecular relationships with a causal inference test
Joshua Millstein, Bin Zhang, Jun Zhu, Eric E Schadt BMC Genetics 2009, 10:23 (27 May 2009)
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22.
311 Accesses
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The juvenile alopecia mutation (jal) maps to mouse Chromosome 2, and is an allele of GATA binding protein 3 (Gata3)
Francisco Ramirez, Aaron M Feliciano, Elisabeth B Adkins, Kevin M Child, Legairre A Radden II, Alexis Salas, Nelson Vila-Santana, José M Horák, Samantha R Hughes, Damek V Spacek, Thomas R King BMC Genetics 2013, 14:40 (9 May 2013)
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23.
296 Accesses
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Molecular cloning and characterization of the porcine prostaglandin transporter (SLCO2A1): evaluation of its role in F4 mediated neonatal diarrhoea
Mario Van Poucke, Vesna Melkebeek, Tim Erkens, Alex Van Zeveren, Eric Cox, Luc J Peelman BMC Genetics 2009, 10:64 (6 October 2009)
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24.
290 Accesses
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Male-like sexual behavior of female mouse lacking fucose mutarotase
Dongkyu Park, Dongwook Choi, Junghoon Lee, Dae-sik Lim, Chankyu Park BMC Genetics 2010, 11:62 (7 July 2010)
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Editor’s summary
Female mice that lack the fucose mutarotase (FucM) gene exhibit male-like sexual behavior and have less tyrosine hydroxylase positive neurons in the preoptic region of the brain than wild-type mice.
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25.
296 Accesses
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Genome-wide association study of antibody response to Newcastle disease virus in chicken
Chenglong Luo, Hao Qu, Jie Ma, Jie Wang, Chunyu Li, Chunfen Yang, Xiaoxiang Hu, Ning Li, Dingming Shu BMC Genetics 2013, 14:42 (10 May 2013)
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26.
284 Accesses
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Major genomic mitochondrial lineages delineate early human expansions
Nicole Maca-Meyer, Ana M González, José M Larruga, Carlos Flores, Vicente M Cabrera BMC Genetics 2001, 2:13 (13 August 2001)
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Editor’s summary
Analysis of 42 complete mitochondrial DNA sequences confirms that humans migrated eastwards from Africa some 60,000 years ago. Later, a western Asian population spread to many areas, including Europe and India, and also returned to Africa.
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27.
288 Accesses
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Accuracy of the unified approach in maternally influenced traits - illustrated by a simulation study in the honey bee (Apis mellifera)
Pooja Gupta, Norbert Reinsch, Andreas Spötter, Tim Conrad, Kaspar Bienefeld BMC Genetics 2013, 14:36 (6 May 2013)
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Editor’s summary
The unified approach for estimating breeding values for maternally influenced traits in honey bees is an accurate and useful methodology for genetic evaluation, especially for traits of apicultural interest such as resistance to Varroa mites.
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28.
337 Accesses
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Saudi Arabian Y-Chromosome diversity and its relationship with nearby regions
Khaled K Abu-Amero, Ali Hellani, Ana M González, Jose M Larruga, Vicente M Cabrera, Peter A Underhill BMC Genetics 2009, 10:59 (22 September 2009)
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29.
253 Accesses
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Breed, sex and anatomical location-specific gene expression profiling of the porcine skeletal muscles
Jie Zhang, Chaowei Zhou, Jideng Ma, Lei Chen, Anan Jiang, Li Zhu, Surong Shuai, Jinyong Wang, Mingzhou Li, Xuewei Li BMC Genetics 2013, 14:53 (15 June 2013)
Abstract | Provisional PDF
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30.
275 Accesses
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PGA: power calculator for case-control genetic association analyses
Idan Menashe, Philip S Rosenberg, Bingshu E Chen BMC Genetics 2008, 9:36 (13 May 2008)
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Editor’s summary
Power for Genetic Association analyses (PGA) is a new user-friendly software package for calculating statistical power, in particular sample size and minimum detectable risk, in case-control genetic-association studies using SNP markers in unrelated subjects.
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31.
271 Accesses
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Genetic variation in South Indian castes: evidence from Y-chromosome, mitochondrial, and autosomal polymorphisms
WS Watkins, R Thara, BJ Mowry, Y Zhang, DJ Witherspoon, W Tolpinrud, MJ Bamshad, S Tirupati, R Padmavati, H Smith, D Nancarrow, C Filippich, LB Jorde BMC Genetics 2008, 9:86 (12 December 2008)
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Editor’s summary
The effects of both historical migrations and the caste system are reflected in the genetic structure of Y-chromosomes, autosomes and mitochondrial DNA in two populations from Tamil Nadu and Andhra Pradesh in southern India.
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32.
266 Accesses
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Insertion-deletion polymorphisms (indels) as genetic markers in natural populations
Ülo Väli, Mikael Brandström, Malin Johansson, Hans Ellegren BMC Genetics 2008, 9:8 (22 January 2008)
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33.
261 Accesses
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High throughput whole rumen metagenome profiling using untargeted massively parallel sequencing
Elizabeth M Ross, Peter J Moate, Carolyn R Bath, Sophie E Davidson, Tim I Sawbridge, Kathryn M Guthridge, Ben G Cocks, Ben J Hayes BMC Genetics 2012, 13:53 (2 July 2012)
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34.
274 Accesses
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Genotype imputation accuracy in a F2 pig population using high density and low density SNP panels
Jose L Gualdrón Duarte, Ronald O Bates, Catherine W Ernst, Nancy E Raney, Rodolfo JC Cantet, Juan P Steibel BMC Genetics 2013, 14:38 (8 May 2013)
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35.
258 Accesses
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Genetic evidence supports linguistic affinity of Mlabri - a hunter-gatherer group in Thailand
Shuhua Xu, Daoroong Kangwanpong, Mark Seielstad, Metawee Srikummool, Jatupol Kampuansai, Li Jin, The HUGO Pan-Asian SNP Consortium* BMC Genetics 2010, 11:18 (19 March 2010)
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36.
267 Accesses
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SNP identification, verification, and utility for population genetics in a non-model genus
Larissa M Williams, Xin Ma, Adam R Boyko, Carlos D Bustamante, Marjorie F Oleksiak BMC Genetics 2010, 11:32 (30 April 2010)
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37.
256 Accesses
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Genome-wide association study of infectious bovine keratoconjunctivitis in Angus cattle
Kadir Kizilkaya, Richard G Tait, Dorian J Garrick, Rohan L Fernando, James M Reecy BMC Genetics 2013, 14:23 (26 March 2013)
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Editor’s summary
A genome-wide association study in Angus cattle to detect susceptibility to infectious bovine keratoconjunctivitis (pinkeye) identifies several SNPs in linkage disequilibrium with the phenotype, which may lead to identification of causative genetic variants.
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38.
240 Accesses
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Mitochondrial DNA haplogroup H structure in North Africa
Hajer Ennafaa, Vicente M Cabrera, Khaled K Abu-Amero, Ana M González, Mohamed B Amor, Rym Bouhaha, Nduna Dzimiri, Amel B Elgaaïed, José M Larruga BMC Genetics 2009, 10:8 (25 February 2009)
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39.
244 Accesses
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Simultaneous SNP identification and assessment of allele-specific bias from ChIP-seq data
Yunyun Ni, Amelia Weber Hall, Anna Battenhouse, Vishwanath R Iyer BMC Genetics 2012, 13:46 (5 September 2012)
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Editor’s summary
A new approach to simultaneously discover SNPs and perform transcription factor binding bias analysis using ChIP-seq data generated in the ENCODE Project reveals widespread heritable allele-specific binding and significant enrichment for disease-associated variants.
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40.
243 Accesses
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Variants in the 3' UTR of General Transcription Factor IIF, polypeptide 2 affect female calving efficiency in Japanese Black cattle
Shinji Sasaki, Takayuki Ibi, Toshio Watanabe, Tamako Matsuhashi, Shogo Ikeda, Yoshikazu Sugimoto BMC Genetics 2013, 14:41 (10 May 2013)
Abstract | Full text | PDF
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41.
236 Accesses
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A genetic dissection of breed composition and performance enhancement in the Alaskan sled dog
Heather J Huson, Heidi G Parker, Jonathan Runstadler, Elaine A Ostrander BMC Genetics 2010, 11:71 (22 July 2010)
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Editor’s summary
The Alaskan sled dog has been bred for performance rather than appearance and its genetic profile is comprised of several different lineages that have influenced the speed, endurance, and work ethic of this particular dog breed.
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42.
230 Accesses
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Genetic affinities among the lower castes and tribal groups of India: inference from Y chromosome and mitochondrial DNA
Ismail Thanseem, Kumarasamy Thangaraj, Gyaneshwer Chaubey, Vijay Singh, Lakkakula VKS Bhaskar, B Mohan Reddy, Alla G Reddy, Lalji Singh BMC Genetics 2006, 7:42 (7 August 2006)
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43.
226 Accesses
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Gene-Based Single Nucleotide Polymorphism Markers for Genetic and Association Mapping in Common Bean
Carlos H Galeano, Andrés J Cortés, Andrea C Fernández, Álvaro Soler, Natalia Franco-Herrera, Godwill Makunde, Jos Vanderleyden, Matthew W Blair BMC Genetics 2012, 13:48 (26 June 2012)
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44.
212 Accesses
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Genotype – environment correlations in corals from the Great Barrier Reef
Petra Lundgren, Juan C Vera, Lesa Peplow, Stephanie Manel, Madeleine JH van Oppen BMC Genetics 2013, 14:9 (22 February 2013)
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Editor’s summary
Significant correlations between environmental factors and genetic polymorphisms in two species of reef-building coral on the Great Barrier Reef provides a first step toward identifying populations that could be robust to future climatic change.
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45.
211 Accesses
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Runs of homozygosity and population history in cattle
Deirdre C Purfield, Donagh P Berry, Sinead McParland, Daniel G Bradley BMC Genetics 2012, 13:70 (14 August 2012)
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46.
210 Accesses
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Evolutionary history of black grouse major histocompatibility complex class IIB genes revealed through single locus sequence-based genotyping
Tanja Strand, Biao Wang, Yvonne Meyer-Lucht, Jacob Höglund BMC Genetics 2013, 14:29 (24 April 2013)
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Editor’s summary
A powerful single locus genotyping method for amplifying MHC class IIB loci in black grouse indicate that duplication of the BLB gene occurred before the species diverged from chickens and pheasants.
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47.
204 Accesses
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Historically low mitochondrial DNA diversity in koalas (Phascolarctos cinereus)
Kyriakos Tsangaras, María C Ávila-Arcos, Yasuko Ishida, Kristofer M Helgen, Alfred L Roca, Alex D Greenwood BMC Genetics 2012, 13:92 (24 October 2012)
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Editor’s summary
Comparing museum specimens with modern populations reveals little evidence that hunting of koalas in the early 20th century caused the low genetic diversity currently seen in this species, suggesting a more ancient factor is to blame.
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48.
177 Accesses
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DNA sequence polymorphisms in a panel of eight candidate bovine imprinted genes and their association with performance traits in Irish Holstein-Friesian cattle
David A Magee, Klaudia M Sikora, Erik W Berkowicz, Donagh P Berry, Dawn J Howard, Michael P Mullen, Ross D Evans, Charles Spillane, David E MacHugh BMC Genetics 2010, 11:93 (13 October 2010)
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49.
194 Accesses
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SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines
Ada Ching, Katherine S Caldwell, Mark Jung, Maurine Dolan, Oscar Smith, Scott Tingey, Michele Morgante, Antoni J Rafalski BMC Genetics 2002, 3:19 (7 October 2002)
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50.
198 Accesses
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Conservation of the COP9/signalosome in budding yeast
Susan Wee, Bettina Hetfeld, Wolfgang Dubiel, Dieter A Wolf BMC Genetics 2002, 3:15 (20 August 2002)
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Editor’s summary
The disruption of budding yeast genes that encode proteins interacting with a putative subunit of the COP9/signalosome provides evidence that this multiprotein complex is present and functional in budding yeast, as well as many metazoans.
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51.
186 Accesses
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Genetic map of Triticum turgidum based on a hexaploid wheat population without genetic recombination for D genome
Li Zhang, Jiang-Tao Luo, Ming Hao, Lian-Quan Zhang, Zhong-Wei Yuan, Ze-Hong Yan, Ya-Xi Liu, Bo Zhang, Bao-Long Liu, Chun-Ji Liu, Huai-Gang Zhang, You-Liang Zheng, Deng-Cai Liu BMC Genetics 2012, 13:69 (13 August 2012)
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52.
191 Accesses
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Comparative analysis of copy number variation detection methods and database construction
Asako Koike, Nao Nishida, Daiki Yamashita, Katsushi Tokunaga BMC Genetics 2011, 12:29 (7 March 2011)
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53.
190 Accesses
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qDTY1.1
, a major QTL for rice grain yield under reproductive-stage drought stress with a consistent effect in multiple elite genetic backgrounds
Prashant Vikram, BP Swamy, Shalabh Dixit, Helal Ahmed, Ma Teresa Sta Cruz, Alok Singh, Arvind Kumar BMC Genetics 2011, 12:89 (18 October 2011)
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54.
186 Accesses
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Long term persistence of clonal malaria parasite Plasmodium falciparum lineages in the Colombian Pacific region
Diego F Echeverry, Shalini Nair, Lyda Osorio, Sanjay Menon, Claribel Murillo, Tim JC Anderson BMC Genetics 2013, 14:2 (7 January 2013)
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Editor’s summary
Analysis of Plasmodium falciparum parasites from malaria patients in Colombia reveals strong subdivision and long-term persistence of clonal populations, highlighting that these aspects of population structure should be taken into account when designing drug resistance studies.
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55.
183 Accesses
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A comparison of statistical methods for genomic selection in a mice population
Haroldo HR Neves, Roberto Carvalheiro, Sandra A Queiroz BMC Genetics 2012, 13:100 (8 November 2012)
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56.
186 Accesses
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A heterozygous variant in the human cardiac miR-133 gene, MIR133A2, alters miRNA duplex processing and strand abundance
Monique Ohanian, David T Humphreys, Elizabeth Anderson, Thomas Preiss, Diane Fatkin BMC Genetics 2013, 14:18 (6 March 2013)
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57.
176 Accesses
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Genome-wide associations for milk production and somatic cell score in Holstein-Friesian cattle in Ireland
Brian K Meredith, Francis J Kearney, Emma K Finlay, Daniel G Bradley, Alan G Fahey, Donagh P Berry, David J Lynn BMC Genetics 2012, 13:21 (26 March 2012)
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58.
177 Accesses
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Diabetes genes identified by genome-wide association studies are regulated in mice by nutritional factors in metabolically relevant tissues and by glucose concentrations in islets
Maggie M Ho, Piriya Yoganathan, Kwan Chu, Subashini Karunakaran, James D Johnson, Susanne M Clee BMC Genetics 2013, 14:10 (25 February 2013)
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59.
179 Accesses
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Effect of interleukin-6 polymorphism on risk of preterm birth within population strata: a meta-analysis
Wilfred Wu, Erin A S Clark, Gregory J Stoddard, W Scott Watkins, M Sean Esplin, Tracy A Manuck, Jinchuan Xing, Michael W Varner, Lynn B Jorde BMC Genetics 2013, 14:30 (25 April 2013)
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60.
176 Accesses
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Power analysis for genome-wide association studies
Robert J Klein BMC Genetics 2007, 8:58 (28 August 2007)
Abstract | Full text | PDF
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Editor’s summary
The statistical power of genome-wide association studies may be increased by a new method for calculating their power, which can help improve study designs by determining optimal combinations of tagSNP markers and sample size.
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61.
179 Accesses
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Molecular mapping of QTLs for plant type and earliness traits in pigeonpea (Cajanus cajan L. Millsp.)
Giriraj Kumawat, Ranjeet S Raje, Shefali Bhutani, Jitendra K Pal, Amitha SVCR Mithra, Kishor Gaikwad, Tilak R Sharma, Nagendra K Singh BMC Genetics 2012, 13:84 (8 October 2012)
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62.
178 Accesses
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A new set of BXD recombinant inbred lines from advanced intercross populations in mice
Jeremy L Peirce, Lu Lu, Jing Gu, Lee M Silver, Robert W Williams BMC Genetics 2004, 5:7 (29 April 2004)
Abstract | Full text | PDF
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Editor’s summary
A new panel of recombinant inbred mouse strains produced from two independent advanced intercrosses between C57BL/6J and DBA/2J progenitor strains bred for multiple generations provides a new resource for collaborative analysis of quantitative traits and gene function.
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63.
170 Accesses
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A comparison of SNP and STR loci for delineating population structure and performing individual genetic assignment
Kevin A Glover, Michael M Hansen, Sigbjørn Lien, Thomas D Als, Bjørn Høyheim, Øystein Skaala BMC Genetics 2010, 11:2 (6 January 2010)
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64.
178 Accesses
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AB-QTL analysis reveals new alleles associated to proline accumulation and leaf wilting under drought stress conditions in barley (Hordeum vulgare L.)
Mohammed A Sayed, Henrik Schumann, Klaus Pillen, Ali A Naz, Jens Léon BMC Genetics 2012, 13:61 (20 July 2012)
Abstract | Full text | PDF
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65.
177 Accesses
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Genetic effects on coat colour in cattle: dilution of eumelanin and phaeomelanin pigments in an F2-Backcross Charolais × Holstein population
Beatriz Gutiérrez-Gil, Pamela Wiener, John L Williams BMC Genetics 2007, 8:56 (16 August 2007)
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66.
175 Accesses
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Polymorphisms within the canine MLPH gene are associated with dilute coat color in dogs
Ute Philipp, Henning Hamann, Lars Mecklenburg, Seiji Nishino, Emmanuel Mignot, Anne-Rose Günzel-Apel, Sheila M Schmutz, Tosso Leeb BMC Genetics 2005, 6:34 (16 June 2005)
Abstract | Full text | PDF
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67.
166 Accesses
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An ancestry informative marker set for determining continental origin: validation and extension using human genome diversity panels
Rami Nassir, Roman Kosoy, Chao Tian, Phoebe A White, Lesley M Butler, Gabriel Silva, Rick Kittles, Marta E Alarcon-Riquelme, Peter K Gregersen, John W Belmont, Francisco M De La Vega, Michael F Seldin BMC Genetics 2009, 10:39 (24 July 2009)
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68.
159 Accesses
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Genetic diversity and relationships in mulberry (genus Morus) as revealed by RAPD and ISSR marker assays
Arvind K Awasthi, GM Nagaraja, GV Naik, Sriramana Kanginakudru, K Thangavelu, Javaregowda Nagaraju BMC Genetics 2004, 5:1 (10 January 2004)
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69.
169 Accesses
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A simple method for estimating genetic diversity in large populations from finite sample sizes
Stanislav Bashalkhanov, Madhav Pandey, Om P Rajora BMC Genetics 2009, 10:84 (16 December 2009)
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70.
174 Accesses
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Genomic scan of selective sweeps in thin and fat tail sheep breeds for identifying of candidate regions associated with fat deposition
Mohammad Hossein Moradi, Ardeshir Nejati-Javaremi, Mohammad Moradi-Shahrbabak, Ken G Dodds, John C McEwan BMC Genetics 2012, 13:10 (26 February 2012)
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Editor’s summary
Three novel regions associated with fat deposition in thin and fat tailed sheep have been identified from a genome-wide scan of selective sweeps using 50,000 SNPs from the Ovine HapMap project
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71.
169 Accesses
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Genome-level identification, gene expression, and comparative analysis of porcine ß-defensin genes
Min-Kyeung Choi, Minh Le, Dinh Nguyen, Hojun Choi, Won Kim, Jin-Hoi Kim, Jungwan Chun, Jiyeon Hyeon, Kunho Seo, Chankyu Park BMC Genetics 2012, 13:98 (15 November 2012)
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Editor’s summary
Comparative analysis of beta-defensin genes in the pig genome shows structural conservation of syntenic regions compared with humans and cattle, with 29 porcine beta-defensin (pBD) genelike sequences identified, 17 of which are previously unreported in the porcine genome.
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72.
169 Accesses
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Investigation of gene-by-sex interactions for lipid traits in diverse populations from the population architecture using genomics and epidemiology study
Kira C Taylor, Cara L Carty, Logan Dumitrescu, Petra Bůžková, Shelley A Cole, Lucia Hindorff, Fred R Schumacher, Lynne R Wilkens, Ralph V Shohet, P Quibrera, Karen C Johnson, Brian E Henderson, Jeff Haessler, Nora Franceschini, Charles B Eaton, David J Duggan, Barbara Cochran, Iona Cheng, Chris S Carlson, Kristin Brown-Gentry, Garnet Anderson, Jose Ambite, Christopher Haiman, Loïc Le Marchand, Charles Kooperberg, Dana C Crawford, Steven Buyske, Kari E North, Myriam Fornage, for the PAGE Study et al.
BMC Genetics 2013, 14:33 (1 May 2013)
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73.
163 Accesses
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Population based allele frequencies of disease associated polymorphisms in the Personalized Medicine Research Project
Deanna S Cross, Lynn C Ivacic, Elisha L Stefanski, Catherine A McCarty BMC Genetics 2010, 11:51 (17 June 2010)
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74.
162 Accesses
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Identification of Lens culinaris defense genes responsive to the anthracnose pathogen Colletotrichum truncatum
Vijai Bhadauria, Kirstin E Bett, Tengsheng Zhou, Albert Vandenberg, Yangdou Wei, Sabine Banniza BMC Genetics 2013, 14:31 (30 April 2013)
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75.
153 Accesses
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Genomic microsatellites identify shared Jewish ancestry intermediate between Middle Eastern and European populations
Naama M Kopelman, Lewi Stone, Chaolong Wang, Dov Gefel, Marcus W Feldman, Jossi Hillel, Noah A Rosenberg BMC Genetics 2009, 10:80 (8 December 2009)
Abstract | Full text | PDF
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Editor’s summary
Analysis of autosomal microsatellite loci in four Jewish populations shows a high level of similarity between them, and supports a largely Middle Eastern ancestry with varying degrees of admixture with European populations.
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76.
158 Accesses
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MHC polymorphism and disease resistance to vibrio anguillarum in 8 families of half-smooth tongue sole (Cynoglossus semilaevis)
Min Du, Song-lin Chen, Yan-hong Liu, Yang Liu, Jing-feng Yang BMC Genetics 2011, 12:78 (2 September 2011)
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77.
155 Accesses
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Genetic structure of Indian populations based on fifteen autosomal microsatellite loci
VK Kashyap, Saurav Guha, T Sitalaximi, G Hima Bindu, Seyed E Hasnain, R Trivedi BMC Genetics 2006, 7:28 (17 May 2006)
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78.
148 Accesses
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Prevalence of common disease-associated variants in Asian Indians
Trevor J Pemberton, Niyati U Mehta, David Witonsky, Anna Di Rienzo, Hooman Allayee, David V Conti, Pragna I Patel BMC Genetics 2008, 9:13 (4 February 2008)
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79.
149 Accesses
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Spatial and temporal variation in population genetic structure of wild Nile tilapia (Oreochromis niloticus) across Africa
Etienne Bezault, Patricia Balaresque, Aboubacar Toguyeni, Yves Fermon, Hitoshi Araki, Jean-François Baroiller, Xavier Rognon BMC Genetics 2011, 12:102 (9 December 2011)
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80.
117 Accesses
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Contrasting effects of Deadend1 (Dnd1) gain and loss of function mutations on allelic inheritance, testicular cancer, and intestinal polyposis
Jennifer L Zechel, Stephanie K Doerner, Angela Lager, Paul J Tesar, Jason D Heaney, Joseph H Nadeau BMC Genetics 2013, 14:54 (17 June 2013)
Abstract | Provisional PDF
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81.
138 Accesses
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ISSR markers show differentiation among Italian populations of Asparagus acutifolius L
Maria Sica, Graziella Gamba, Stefania Montieri, Luciano Gaudio, Serena Aceto BMC Genetics 2005, 6:17 (18 March 2005)
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82.
150 Accesses
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Quantitative Trait Locus (QTL) meta-analysis and comparative genomics for candidate gene prediction in perennial ryegrass (Lolium perenne L.)
Hiroshi Shinozuka, Noel OI Cogan, German C Spangenberg, John W Forster BMC Genetics 2012, 13:101 (8 November 2012)
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83.
148 Accesses
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A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers
Alessandra C Palhares, Taislene B Rodrigues-Morais, Marie-Anne Van Sluys, Douglas S Domingues, Walter Maccheroni, Hamilton Jordão, Anete P Souza, Thiago G Marconi, Marcelo Mollinari, Rodrigo Gazaffi, Antonio Augusto F Garcia, Maria Lucia Vieira BMC Genetics 2012, 13:51 (28 June 2012)
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84.
150 Accesses
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Genetic background (DDD/Sgn versus C57BL/6J) strongly influences postnatal growth of male mice carrying the A
y
allele at the agouti locus: identification of quantitative trait loci associated with diabetes and body weight loss
Jun-ichi Suto, Kunio Satou BMC Genetics 2013, 14:35 (4 May 2013)
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85.
152 Accesses
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Isolation by distance, web service
Jeffrey L Jensen, Andrew J Bohonak, Scott T Kelley BMC Genetics 2005, 6:13 (11 March 2005)
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86.
155 Accesses
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Genetic dissection of rice grain shape using a recombinant inbred line population derived from two contrasting parents and fine mapping a pleiotropic quantitative trait locus qGL7
Xufeng Bai, Lijun Luo, Wenhao Yan, Mallikarjuna Rao Kovi, Wei Zhan, Yongzhong Xing BMC Genetics 2010, 11:16 (26 February 2010)
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87.
146 Accesses
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Genetic affinities between the Yami tribe people of Orchid Island and the Philippine Islanders of the Batanes archipelago
Jun-Hun Loo, Jean A Trejaut, Ju-Chen Yen, Zong-Sian Chen, Chien-Liang Lee, Marie Lin BMC Genetics 2011, 12:21 (31 January 2011)
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88.
146 Accesses
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Culture creates genetic structure in the Caucasus: Autosomal, mitochondrial, and Y-chromosomal variation in Daghestan
Elizabeth E Marchani, W Scott Watkins, Kazima Bulayeva, Henry C Harpending, Lynn B Jorde BMC Genetics 2008, 9:47 (17 July 2008)
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89.
142 Accesses
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Identification of candidate genes of QTLs for seed weight in Brassica napus through comparative mapping among Arabidopsis and Brassica species
Guangqin Cai, Qingyong Yang, Qian Yang, Zhenxing Zhao, Hao Chen, Jian Wu, Chuchuan Fan, Yongming Zhou BMC Genetics 2012, 13:105 (6 December 2012)
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90.
145 Accesses
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GWAPower: a statistical power calculation software for genome-wide association studies with quantitative traits
Sheng Feng, Shengchu Wang, Chia-Cheng Chen, Lan Lan BMC Genetics 2011, 12:12 (21 January 2011)
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91.
143 Accesses
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Analysis of genetic variation in Ashkenazi Jews by high density SNP genotyping
Adam B Olshen, Bert Gold, Kirk E Lohmueller, Jeffery P Struewing, Jaya Satagopan, Stefan A Stefanov, Eleazar Eskin, Tomas Kirchhoff, James A Lautenberger, Robert J Klein, Eitan Friedman, Larry Norton, Nathan A Ellis, Agnes Viale, Catherine S Lee, Patrick I Borgen, Andrew G Clark, Kenneth Offit, Jeff Boyd BMC Genetics 2008, 9:14 (5 February 2008)
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92.
142 Accesses
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Proechimys (Rodentia, Echimyidae): characterization and taxonomic considerations of a form with a very low diploid number and a multiple sex chromosome system
Paulo JS Amaral, Cleusa Y Nagamachi, Renata CR Noronha, Marlyson JR Costa, Adenilson L Pereira, Rogerio V Rossi, Ana C Mendes-Oliveira, Julio C Pieczarka BMC Genetics 2013, 14:21 (11 March 2013)
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93.
143 Accesses
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Age modifies the genotype-phenotype relationship for the bitter receptor TAS2R38
Julie A Mennella, M Yanina Pepino, Fujiko F Duke, Danielle R Reed BMC Genetics 2010, 11:60 (1 July 2010)
Abstract | Full text | PDF
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Editor’s summary
Variation at the TAS2R38 locus is associated with bitter tasting ability; children with a heterozygous polymorphism in this taste receptor gene are more sensitive to bitterness than adults of the same haplotype.
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94.
139 Accesses
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A missense mutation in growth differentiation factor 9 (GDF9) is strongly associated with litter size in sheep
Dag I Våge, Maren Husdal, Matthew P Kent, Gunnar Klemetsdal, Inger A Boman BMC Genetics 2013, 14:1 (2 January 2013)
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95.
134 Accesses
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An assessment of population structure in eight breeds of cattle using a whole genome SNP panel
Stephanie D McKay, Robert D Schnabel, Brenda M Murdoch, Lakshmi K Matukumalli, Jan Aerts, Wouter Coppieters, Denny Crews, Emmanuel Neto, Clare A Gill, Chuan Gao, Hideyuki Mannen, Zhiquan Wang, Curt P Van Tassell, John L Williams, Jeremy F Taylor, Stephen S Moore BMC Genetics 2008, 9:37 (20 May 2008)
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96.
135 Accesses
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Empirical evaluation of humpback whale telomere length estimates; quality control and factors causing variability in the singleplex and multiplex qPCR methods
Morten Olsen, Martine Bérubé, Jooke Robbins, Per J Palsbøll BMC Genetics 2012, 13:77 (6 September 2012)
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97.
140 Accesses
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RHD positive haplotypes in D negative Europeans
Franz F Wagner, Alexander Frohmajer, Willy A Flegel BMC Genetics 2001, 2:10 (16 July 2001)
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98.
141 Accesses
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qDTY
12.1
: a locus with a consistent effect on grain yield under drought in rice
Krishna Kumar Mishra, Prashant Vikram, Ram Baran Yadaw, BP Mallikarjuna Swamy, Shalabh Dixit, Ma Teresa Sta Cruz, Paul Maturan, Shailesh Marker, Arvind Kumar BMC Genetics 2013, 14:12 (26 February 2013)
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99.
140 Accesses
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Methods of tagSNP selection and other variables affecting imputation accuracy in swine
Yvonne M Badke, Ronald O Bates, Catherine W Ernst, Clint Schwab, Justin Fix, Curtis P Van Tassell, Juan P Steibel BMC Genetics 2013, 14:8 (21 February 2013)
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100.
138 Accesses
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Genotyping faecal samples of Bengal tiger Panthera tigris tigris for population estimation: A pilot study
Jyotsna Bhagavatula, Lalji Singh BMC Genetics 2006, 7:48 (17 October 2006)
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