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BMC Bioinformatics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 7 Supplement 4

Symposium of Computations in Bioinformatics and Bioscience (SCBB06)

Research

Symposium of Computations in Bioinformatics and Bioscience (SCBB06) in conjunction with the International Multi-Symposiums on Computer and Computational Sciences 2006 (IMSCCS|06)

Hangzhou, China

June 20-24, 2006

Edited by Youping Deng, Jun Ni

Additional Information | Conference website

Review   Open Access

Development of computations in bioscience and bioinformatics and its application: review of the Symposium of Computations in Bioinformatics and Bioscience (SCBB06)

Youping Deng, Jun Ni, Chaoyang Zhang BMC Bioinformatics 2006, 7(Suppl 4):S1 (12 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Frequency distribution of TATA Box and extension sequences on human promoters

Wei Shi, Wanlei Zhou BMC Bioinformatics 2006, 7(Suppl 4):S2 (12 December 2006)

Abstract | Full text | PDF | PubMed

Research   Open Access

An improved ant colony algorithm with diversified solutions based on the immune strategy

Ling Qin, Yi Pan, Ling Chen, Yixin Chen BMC Bioinformatics 2006, 7(Suppl 4):S3 (12 December 2006)

Abstract | Full text | PDF | PubMed

Research   Open Access

A fast parallel algorithm for finding the longest common sequence of multiple biosequences

Yixin Chen, Andrew Wan, Wei Liu BMC Bioinformatics 2006, 7(Suppl 4):S4 (12 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Estimate haplotype frequencies in pedigrees

Qiangfeng Zhang, Yuzhong Zhao, Guoliang Chen, Yun Xu BMC Bioinformatics 2006, 7(Suppl 4):S5 (12 December 2006)

Abstract | Full text | PDF | PubMed

Research   Open Access

Maximum common subgraph: some upper bound and lower bound results

Xiuzhen Huang, Jing Lai, Steven F Jennings BMC Bioinformatics 2006, 7(Suppl 4):S6 (12 December 2006)

Abstract | Full text | PDF | PubMed

Research   Open Access

FM-test: a fuzzy-set-theory-based approach to differential gene expression data analysis

Lily R Liang, Shiyong Lu, Xuena Wang, Yi Lu, Vinay Mandal, Dorrelyn Patacsil, Deepak Kumar BMC Bioinformatics 2006, 7(Suppl 4):S7 (12 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

The impact of sample imbalance on identifying differentially expressed genes

Kun Yang, Jianzhong Li, Hong Gao BMC Bioinformatics 2006, 7(Suppl 4):S8 (12 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Degenerated primer design to amplify the heavy chain variable region from immunoglobulin cDNA

Ying Wang, Wei Chen, Xu Li, Bing Cheng BMC Bioinformatics 2006, 7(Suppl 4):S9 (12 December 2006)

Abstract | Full text | PDF | PubMed

Research   Open Access

SEQOPTICS: a protein sequence clustering system

Yonghui Chen, Kevin D Reilly, Alan P Sprague, Zhijie Guan BMC Bioinformatics 2006, 7(Suppl 4):S10 (12 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

The relationship between protein sequences and their gene ontology functions

Zhong-Hui Duan, Brent Hughes, Lothar Reichel, Dianne M Perez, Ting Shi BMC Bioinformatics 2006, 7(Suppl 4):S11 (12 December 2006)

Abstract | Full text | PDF | PubMed

Research   Open Access

Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm

Kang Ning, Hon Leong BMC Bioinformatics 2006, 7(Suppl 4):S12 (12 December 2006)

Abstract | Full text | PDF | PubMed

Research   Open Access

Determination of the minimum number of microarray experiments for discovery of gene expression patterns

Fang-Xiang Wu, WJ Zhang, Anthony J Kusalik BMC Bioinformatics 2006, 7(Suppl 4):S13 (12 December 2006)

Abstract | Full text | PDF | PubMed

Research   Open Access

Improved Chou-Fasman method for protein secondary structure prediction

Hang Chen, Fei Gu, Zhengge Huang BMC Bioinformatics 2006, 7(Suppl 4):S14 (12 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Parallelization of multicategory support vector machines (PMC-SVM) for classifying microarray data

Chaoyang Zhang, Peng Li, Arun Rajendran, Youping Deng, Dequan Chen BMC Bioinformatics 2006, 7(Suppl 4):S15 (12 December 2006)

Abstract | Full text | PDF | PubMed

Research   Open Access

Identification of new members of hydrophobin family using primary structure analysis

Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed Elasri BMC Bioinformatics 2006, 7(Suppl 4):S16 (12 December 2006)

Abstract | Full text | PDF | PubMed

Research   Open Access

Evaluation of clustering algorithms for gene expression data

Susmita Datta, Somnath Datta BMC Bioinformatics 2006, 7(Suppl 4):S17 (12 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

GenomeBlast: a web tool for small genome comparison

Guoqing Lu, Liying Jiang, Resa MK Helikar, Thaine W Rowley, Luwen Zhang, Xianfeng Chen, Etsuko N Moriyama BMC Bioinformatics 2006, 7(Suppl 4):S18 (12 December 2006)

Abstract | Full text | PDF | PubMed

Research   Open Access

Clustering of gene expression data: performance and similarity analysis

Longde Yin, Chun-Hsi Huang, Jun Ni BMC Bioinformatics 2006, 7(Suppl 4):S19 (12 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Particle simulation approach for subcellular dynamics and interactions of biological molecules

Ryuzo Azuma, Tetsuji Kitagawa, Hiroshi Kobayashi, Akihiko Konagaya BMC Bioinformatics 2006, 7(Suppl 4):S20 (12 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Combining comparative genomics with de novo motif discovery to identify human transcription factor DNA-binding motifs

Linyong Mao, W Jim Zheng BMC Bioinformatics 2006, 7(Suppl 4):S21 (12 December 2006)

Abstract | Full text | PDF | PubMed

Research   Open Access

Comparison of transcriptional responses in liver tissue and primary hepatocyte cell cultures after exposure to hexahydro-1, 3, 5-trinitro-1, 3, 5-triazine

Edward J Perkins, Wenjun Bao, Xin Guan, Choo-Yaw Ang, Russell D Wolfinger, Tzu-Ming Chu, Sharon A Meyer, Laura S Inouye BMC Bioinformatics 2006, 7(Suppl 4):S22 (12 December 2006)

Abstract | Full text | PDF | PubMed

Research   Open Access

Systematic gene function prediction from gene expression data by using a fuzzy nearest-cluster method

Xiao-Li Li, Yin-Chet Tan, See-Kiong Ng BMC Bioinformatics 2006, 7(Suppl 4):S23 (12 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

A novel approach to phylogenetic tree construction using stochastic optimization and clustering

Ling Qin, Yixin Chen, Yi Pan, Ling Chen BMC Bioinformatics 2006, 7(Suppl 4):S24 (12 December 2006)

Abstract | Full text | PDF | PubMed

Research   Open Access

SVM Classifier – a comprehensive java interface for support vector machine classification of microarray data

Mehdi Pirooznia, Youping Deng BMC Bioinformatics 2006, 7(Suppl 4):S25 (12 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data

Guoqing Lu, The V Nguyen, Yuannan Xia, Michael Fromm BMC Bioinformatics 2006, 7(Suppl 4):S26 (12 December 2006)

Abstract | Full text | PDF | PubMed

Research   Open Access

In silico modelling of hormone response elements

Maria Stepanova, Feng Lin, Valerie Lin BMC Bioinformatics 2006, 7(Suppl 4):S27 (12 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central


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