All
51.
Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs
Suleiman A Khan, Ali Faisal, John Mpindi, Juuso A Parkkinen, Tuomo Kalliokoski, Antti Poso, Olli P Kallioniemi, Krister Wennerberg, Samuel Kaski BMC Bioinformatics 2012, 13 :112 (30 May 2012)
Abstract | Full text | PDF
| PubMed
52.
Workflows for microarray data processing in the Kepler environment
Thomas Stropp, Timothy McPhillips, Bertram Ludäscher, Mark Bieda BMC Bioinformatics 2012, 13 :102 (17 May 2012)
Abstract | Full text | PDF
| PubMed
53.
Augmented annotation and orthologue analysis for Oryctolagus cuniculus : Better Bunny
Douglas B Craig, Sujatha Kannan, Alan A Dombkowski BMC Bioinformatics 2012, 13 :84 (8 May 2012)
Abstract | Full text | PDF
| PubMed
54.
False discovery rate control in two-stage designs
Sonja Zehetmayer, Martin Posch BMC Bioinformatics 2012, 13 :81 (6 May 2012)
Abstract | Full text | PDF
| PubMed
55.
A unified computational model for revealing and predicting subtle subtypes of cancers
Xianwen Ren, Yong Wang, Jiguang Wang, Xiang-Sun Zhang BMC Bioinformatics 2012, 13 :70 (1 May 2012)
Abstract | Full text | PDF
| PubMed
56.
Detecting disease-associated genes with confounding variable adjustment and the impact on genomic meta-analysis: With application to major depressive disorder
Xingbin Wang, Yan Lin, Chi Song, Etienne Sibille, George C Tseng BMC Bioinformatics 2012, 13 :52 (29 March 2012)
Abstract | Full text | PDF
| PubMed
57.
miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases
Cedric Laczny, Petra Leidinger, Jan Haas, Nicole Ludwig, Christina Backes, Andreas Gerasch, Michael Kaufmann, Britta Vogel, Hugo A Katus, Benjamin Meder, Cord Stähler, Eckart Meese, Hans-Peter Lenhof, Andreas Keller BMC Bioinformatics 2012, 13 :36 (22 February 2012)
Abstract | Full text | PDF
| PubMed | Cited on BioMed Central
58.
ICGE : an R package for detecting relevant clusters and atypical units in gene expression
Itziar Irigoien, Basilio Sierra, Concepcion Arenas BMC Bioinformatics 2012, 13 :30 (13 February 2012)
Abstract | Full text | PDF
| PubMed
59.
Independent Principal Component Analysis for biologically meaningful dimension reduction of large biological data sets
Fangzhou Yao, Jeff Coquery, Kim-Anh Lê Cao BMC Bioinformatics 2012, 13 :24 (3 February 2012)
Abstract | Full text | PDF
| PubMed
60.
An integrative variant analysis suite for whole exome next-generation sequencing data
Danny Challis, Jin Yu, Uday S Evani, Andrew R Jackson, Sameer Paithankar, Cristian Coarfa, Aleksandar Milosavljevic, Richard A Gibbs, Fuli Yu BMC Bioinformatics 2012, 13 :8 (12 January 2012)
Abstract | Full text | PDF
| PubMed | Cited on BioMed Central
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Editor’s summary
The Atlas2 is an analysis suite for variant calling in whole exome sequencing that combines regression models and user-adjustable cutoffs in order to separate true SNPs and INDELs from sequencing and mapping errors, with high sensitivity
