All
71.
A novel method to compare protein structures using local descriptors
Paweł Daniluk, Bogdan Lesyng BMC Bioinformatics 2011, 12 :344 (17 August 2011)
Abstract | Full text | PDF
| PubMed | Cited on BioMed Central
72.
Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature
Wen Zhang, Yi Xiong, Meng Zhao, Hua Zou, Xinghuo Ye, Juan Liu BMC Bioinformatics 2011, 12 :341 (17 August 2011)
Abstract | Full text | PDF
| PubMed
73.
Implementation of 3D spatial indexing and compression in a large-scale molecular dynamics simulation database for rapid atomic contact detection
Rudesh D Toofanny, Andrew M Simms, David AC Beck, Valerie Daggett BMC Bioinformatics 2011, 12 :334 (10 August 2011)
Abstract | Full text | PDF
| PubMed
74.
Comprehensive, atomic-level characterization of structurally characterized protein-protein interactions: the PICCOLO database
George R Bickerton, Alicia P Higueruelo, Tom L Blundell BMC Bioinformatics 2011, 12 :313 (29 July 2011)
Abstract | Full text | PDF
| PubMed
75.
Multi-target QSAR modelling in the analysis and design of HIV-HCV co-inhibitors: an in-silico study
Qi Liu, Han Zhou, Lin Liu, Xi Chen, Ruixin Zhu, Zhiwei Cao BMC Bioinformatics 2011, 12 :294 (20 July 2011)
Abstract | Full text | PDF
| PubMed | Cited on BioMed Central
76.
Improving the performance of β -turn prediction using predicted shape strings and a two-layer support vector machine model
Zehui Tang, Tonghua Li, Rida Liu, Wenwei Xiong, Jiangming Sun, Yaojuan Zhu, Guanyan Chen BMC Bioinformatics 2011, 12 :283 (13 July 2011)
Abstract | Full text | PDF
| PubMed
77.
DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking
Shiyong Liu, Ilya A Vakser BMC Bioinformatics 2011, 12 :280 (11 July 2011)
Abstract | Full text | PDF
| PubMed
78.
AlignHUSH: Alignment of HMMs using structure and hydrophobicity information
Oruganty Krishnadev, Narayanaswamy Srinivasan BMC Bioinformatics 2011, 12 :275 (5 July 2011)
Abstract | Full text | PDF
| PubMed
79.
MAVENs: Motion analysis and visualization of elastic networks and structural ensembles
Michael T Zimmermann, Andrzej Kloczkowski, Robert L Jernigan BMC Bioinformatics 2011, 12 :264 (28 June 2011)
Abstract | Full text | PDF
| PubMed
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Editor’s summary
MAVEN is a new software suite for generating elastic network models from raw program database files or density maps, and is able to integrate model generation, evaluation, analysis and visualization into a user-friendly environment.
80.
Determinants of antigenicity and specificity in immune response for protein sequences
Yulong Wang, Wenjun Wu, Nicolas N Negre, Kevin P White, Cheng Li, Parantu K Shah BMC Bioinformatics 2011, 12 :251 (21 June 2011)
Abstract | Full text | PDF
| PubMed
