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Structural analysis

This section incorporates all aspects of structural analysis including but not limited to: methods and applications for the analysis of biological structures, protein structural and biophysical analysis, and structure-based drug design.

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101.

Software   Open Access

PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality

Yves Dehouck, Jean Kwasigroch, Dimitri Gilis, Marianne Rooman BMC Bioinformatics 2011, 12:151 (13 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

102.

Research article   Open Access

Hydrophobic pulses predict transmembrane helix irregularities and channel transmembrane units

Damien Paulet, Mireille Claustres, Christophe Béroud BMC Bioinformatics 2011, 12:135 (6 May 2011)

Abstract | Full text | PDF | PubMed

103.

Research article   Open Access

TurboFold: Iterative probabilistic estimation of secondary structures for multiple RNA sequences

Arif O Harmanci, Gaurav Sharma, David H Mathews BMC Bioinformatics 2011, 12:108 (20 April 2011)

Abstract | Full text | PDF | PubMed

104.

Research article   Open Access

A theoretical entropy score as a single value to express inhibitor selectivity

Joost CM Uitdehaag, Guido JR Zaman BMC Bioinformatics 2011, 12:94 (12 April 2011)

Abstract | Full text | PDF | PubMed

105.

Methodology article   Open Access Highly Accessed

Outer membrane proteins can be simply identified using secondary structure element alignment

Ren-Xiang Yan, Zhen Chen, Ziding Zhang BMC Bioinformatics 2011, 12:76 (17 March 2011)

Abstract | Full text | PDF | PubMed

106.

Research article   Open Access Highly Accessed

A quality metric for homology modeling: the H-factor

Eric di Luccio, Patrice Koehl BMC Bioinformatics 2011, 12:48 (4 February 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

107.

Research article   Open Access Highly Accessed

ASPDock: protein-protein docking algorithm using atomic solvation parameters model

Lin Li, Dachuan Guo, Yangyu Huang, Shiyong Liu, Yi Xiao BMC Bioinformatics 2011, 12:36 (27 January 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

108.

Research article   Open Access Highly Accessed

Prediction of RNA secondary structure by maximizing pseudo-expected accuracy

Michiaki Hamada, Kengo Sato, Kiyoshi Asai BMC Bioinformatics 2010, 11:586 (30 November 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

109.

Research article   Open Access

Sampling the conformation of protein surface residues for flexible protein docking

Patricia Francis-Lyon, Shengyin Gu, Joel Hass, Nina Amenta, Patrice Koehl BMC Bioinformatics 2010, 11:575 (23 November 2010)

Abstract | Full text | PDF | PubMed

110.

Research article   Open Access

Knowledge-based biomedical word sense disambiguation: comparison of approaches

Antonio J Jimeno-Yepes, Alan R Aronson BMC Bioinformatics 2010, 11:569 (22 November 2010)

Abstract | Full text | PDF | PubMed

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