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		Research article Towards a theoretical understanding of false positives in DNA motif finding Amin Zia, Alan M Moses BMC Bioinformatics 2012, 13:151 (27 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article A statistical approach to selecting and confirming validation targets in -omics experiments Jeffrey T Leek, Margaret A Taub, Jason L Rasgon BMC Bioinformatics 2012, 13:150 (27 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software PREMIM and EMIM: tools for estimation of maternal, imprinting and interaction effects using multinomial modelling Richard Howey, Heather J Cordell BMC Bioinformatics 2012, 13:149 (27 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Surprising results on phylogenetic tree building methods based on molecular sequences Gaston H Gonnet BMC Bioinformatics 2012, 13:148 (27 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Arrow plot: a new graphical tool for selecting up and down regulated genes and genes differentially expressed on sample subgroups Carina Silva-Fortes, Maria Amaral Turkman, Lisete Sousa BMC Bioinformatics 2012, 13:147 (26 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software Identifying mutation regions for closely related individuals without a known pedigree Wenjuan Cui, Lusheng Wang BMC Bioinformatics 2012, 13:146 (25 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Error-correcting properties of the SOLiD Exact Call Chemistry Tim Massingham, Nick Goldman BMC Bioinformatics 2012, 13:145 (22 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signatures Andrew F Neuwald, Christopher J Lanczycki, Aron Marchler-Bauer BMC Bioinformatics 2012, 13:144 (22 June 2012) Abstract \| Full text \| PDF \| PubMed
		Database QuartetS-DB: a large-scale orthology database for prokaryotes and eukaryotes inferred by evolutionary evidence Chenggang Yu, Valmik Desai, Li Cheng, Jaques Reifman BMC Bioinformatics 2012, 13:143 (22 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Role of long- and short-range hydrophobic, hydrophilic and charged residues contact network in protein’s structural organization Dhriti Sengupta, Sudip Kundu BMC Bioinformatics 2012, 13:142 (21 June 2012) Abstract \| Full text \| PDF \| PubMed
		Database The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools Andreas Wilke, Travis Harrison, Jared Wilkening, Dawn Field, Elizabeth M Glass, Nikos Kyrpides, Konstantinos Mavrommatis, Folker Meyer BMC Bioinformatics 2012, 13:141 (21 June 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments Ming Wen, Yang Shen, Suhua Shi, Tian Tang BMC Bioinformatics 2012, 13:140 (21 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Comparative study of classification algorithms for immunosignaturing data Muskan Kukreja, Stephen Johnston, Phillip Stafford BMC Bioinformatics 2012, 13:139 (21 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software EGNAS: an exhaustive DNA sequence design algorithm Alfred Kick, Martin Bönsch, Michael Mertig BMC Bioinformatics 2012, 13:138 (20 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article A Bayesian model for classifying all differentially expressed proteins simultaneously in 2D PAGE gels Steven H Wu, Michael A Black, Robyn A North, Allen G Rodrigo BMC Bioinformatics 2012, 13:137 (19 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Down-weighting overlapping genes improves gene set analysis Adi Tarca, Sorin Draghici, Gaurav Bhatti, Roberto Romero BMC Bioinformatics 2012, 13:136 (19 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article β-empirical Bayes inference and model diagnosis of microarray data Mohammad Hossain Mollah, M Haque Mollah, Hirohisa Kishino BMC Bioinformatics 2012, 13:135 (19 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction Jian Ye, George Coulouris, Irena Zaretskaya, Ioana Cutcutache, Steve Rozen, Thomas L Madden BMC Bioinformatics 2012, 13:134 (18 June 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software Bios2mds: an R package for comparing orthologous protein families by metric multidimensional scaling Julien Pelé, Jean-Michel Bécu, Hervé Abdi, Marie Chabbert BMC Bioinformatics 2012, 13:133 (15 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software Simulating gene-gene and gene-environment interactions in complex diseases: Gene-Environment iNteraction Simulator 2 Michele Pinelli, Giovanni Scala, Roberto Amato, Sergio Cocozza, Gennaro Miele BMC Bioinformatics 2012, 13:132 (14 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Gene regulatory network modeling via global optimization of high-order dynamic Bayesian network Nguyen Xuan, Madhu Chetty, Ross Coppel, Pramod P Wangikar BMC Bioinformatics 2012, 13:131 (13 June 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Methodology article Bayesian model to detect phenotype-specific genes for copy number data Juan R González, Carlos Abellán, Juan J Abellán BMC Bioinformatics 2012, 13:130 (13 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software Fast and robust multiple sequence alignment with phylogeny-aware gap placement Adam M Szalkowski BMC Bioinformatics 2012, 13:129 (13 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article ROCS: a Reproducibility Index and Confidence Score for Interaction Proteomics Studies Jean-Eudes Dazard, Sudipto Saha, Rob M Ewing BMC Bioinformatics 2012, 13:128 (8 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article The language of gene ontology: a Zipf’s law analysis Leila Kalankesh, Robert Stevens, Andy Brass BMC Bioinformatics 2012, 13:127 (7 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Identifying dysregulated pathways in cancers from pathway interaction networks Ke-Qin Liu, Zhi-Ping Liu, Jin-Kao Hao, Luonan Chen, Xing-Ming Zhao BMC Bioinformatics 2012, 13:126 (7 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software PollenCALC: Software for estimation of pollen compatibility of self-incompatible allo- and autotetraploid species Andrea Aguirre, Bernd Wollenweber, Ursula K Frei, Thomas Lübberstedt BMC Bioinformatics 2012, 13:125 (7 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software BioWord: A sequence manipulation suite for Microsoft Word Laura J Anzaldi, Daniel Muñoz-Fernández, Ivan Erill BMC Bioinformatics 2012, 13:124 (7 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software Quartet decomposition server: a platform for analyzing phylogenetic trees Fenglou Mao, David Williams, Olga Zhaxybayeva, Maria Poptsova, Pascal Lapierre, J Gogarten, Ying Xu BMC Bioinformatics 2012, 13:123 (7 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software Web tools for large-scale 3D biological images and atlases Zsolt L Husz, Nicholas Burton, Bill Hill, Nestor Milyaev, Richard A Baldock BMC Bioinformatics 2012, 13:122 (7 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Detection of identity by descent using next-generation whole genome sequencing data Shu-Yi Su, Jay Kasberger, Sergio Baranzini, William Byerley, Wilson Liao, Jorge Oksenberg, Elliott Sherr, Eric Jorgenson BMC Bioinformatics 2012, 13:121 (6 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article On the hypothesis-free testing of metabolite ratios in genome-wide and metabolome-wide association studies Ann-Kristin Petersen, Jan Krumsiek, Brigitte Wägele, Fabian J Theis, H-Erich Wichmann, Christian Gieger, Karsten Suhre BMC Bioinformatics 2012, 13:120 (6 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Biomine: predicting links between biological entities using network models of heterogeneous databases Lauri Eronen, Hannu Toivonen BMC Bioinformatics 2012, 13:119 (6 June 2012) Abstract \| Full text \| PDF \| PubMed \| 1 comment
		Research article Predicting protein-ATP binding sites from primary sequence through fusing bi-profile sampling of multi-view features Ya-Nan Zhang, Dong-Jun Yu, Shu-Sen Li, Yong-Xian Fan, Yan Huang, Hong-Bin Shen BMC Bioinformatics 2012, 13:118 (31 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments Peter W Collingridge, Steven Kelly BMC Bioinformatics 2012, 13:117 (30 May 2012) Abstract \| Full text \| PDF \| PubMed
		Software OLSVis: an animated, interactive visual browser for bio-ontologies Steven Vercruysse, Aravind Venkatesan, Martin Kuiper BMC Bioinformatics 2012, 13:116 (30 May 2012) Abstract \| Full text \| PDF \| PubMed
		Software PyMS: a Python toolkit for processing of gas chromatography-mass spectrometry (GC-MS) data. Application and comparative study of selected tools Sean O'Callaghan, David P De Souza, Andrew Isaac, Qiao Wang, Luke Hodkinson, Moshe Olshansky, Tim Erwin, Bill Appelbe, Dedreia L Tull, Ute Roessner, Antony Bacic, Malcolm J McConville, Vladimir A Likić BMC Bioinformatics 2012, 13:115 (30 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Detection and correction of probe-level artefacts on microarrays Tobias Petri, Evi Berchtold, Ralf Zimmer, Caroline C Friedel BMC Bioinformatics 2012, 13:114 (30 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Molecular ecological network analyses Ye Deng, Yi-Huei Jiang, Yunfeng Yang, Zhili He, Feng Luo, Jizhong Zhou BMC Bioinformatics 2012, 13:113 (30 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs Suleiman A Khan, Ali Faisal, John Mpindi, Juuso A Parkkinen, Tuomo Kalliokoski, Antti Poso, Olli P Kallioniemi, Krister Wennerberg, Samuel Kaski BMC Bioinformatics 2012, 13:112 (30 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins Lukasz P Kozlowski, Janusz M Bujnicki BMC Bioinformatics 2012, 13:111 (24 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software TreeSnatcher plus: capturing phylogenetic trees from images Thomas Laubach, Arndt von Haeseler, Martin J Lercher BMC Bioinformatics 2012, 13:110 (24 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data Min Li, Xuehong Wu, Jianxin Wang, Yi Pan BMC Bioinformatics 2012, 13:109 (23 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Extracting semantically enriched events from biomedical literature Makoto Miwa, Paul Thompson, John McNaught, Douglas B Kell, Sophia Ananiadou BMC Bioinformatics 2012, 13:108 (23 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Learning Sparse Representations for Fruit-Fly Gene Expression Pattern Image Annotation and Retrieval Lei Yuan, Alexander Woodard, Shuiwang Ji, Yuan Jiang, Zhi-Hua Zhou, Sudhir Kumar, Jieping Ye BMC Bioinformatics 2012, 13:107 (23 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Natural product-likeness score revisited: an open-source, open-data implementation Kalai Vanii, Pablo Moreno, Andreas Truszkowski, Peter Ertl, Christoph Steinbeck BMC Bioinformatics 2012, 13:106 (20 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software Multiple structure alignment with msTALI Paul Shealy, Homayoun Valafar BMC Bioinformatics 2012, 13:105 (20 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Profile-based short linear protein motif discovery Niall J Haslam, Denis C Shields BMC Bioinformatics 2012, 13:104 (18 May 2012) Abstract \| Full text \| PDF \| PubMed
		Software rCUR: an R package for CUR matrix decomposition András Bodor, István Csabai, Michael W Mahoney, Norbert Solymosi BMC Bioinformatics 2012, 13:103 (17 May 2012) Abstract \| Full text \| PDF \| PubMed
		Software Workflows for microarray data processing in the Kepler environment Thomas Stropp, Timothy McPhillips, Bertram Ludäscher, Mark Bieda BMC Bioinformatics 2012, 13:102 (17 May 2012) Abstract \| Full text \| PDF \| PubMed

	All
		Research article Towards a theoretical understanding of false positives in DNA motif finding Amin Zia, Alan M Moses BMC Bioinformatics 2012, 13:151 (27 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article A statistical approach to selecting and confirming validation targets in -omics experiments Jeffrey T Leek, Margaret A Taub, Jason L Rasgon BMC Bioinformatics 2012, 13:150 (27 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software PREMIM and EMIM: tools for estimation of maternal, imprinting and interaction effects using multinomial modelling Richard Howey, Heather J Cordell BMC Bioinformatics 2012, 13:149 (27 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Surprising results on phylogenetic tree building methods based on molecular sequences Gaston H Gonnet BMC Bioinformatics 2012, 13:148 (27 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Arrow plot: a new graphical tool for selecting up and down regulated genes and genes differentially expressed on sample subgroups Carina Silva-Fortes, Maria Amaral Turkman, Lisete Sousa BMC Bioinformatics 2012, 13:147 (26 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software Identifying mutation regions for closely related individuals without a known pedigree Wenjuan Cui, Lusheng Wang BMC Bioinformatics 2012, 13:146 (25 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Error-correcting properties of the SOLiD Exact Call Chemistry Tim Massingham, Nick Goldman BMC Bioinformatics 2012, 13:145 (22 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signatures Andrew F Neuwald, Christopher J Lanczycki, Aron Marchler-Bauer BMC Bioinformatics 2012, 13:144 (22 June 2012) Abstract \| Full text \| PDF \| PubMed
		Database QuartetS-DB: a large-scale orthology database for prokaryotes and eukaryotes inferred by evolutionary evidence Chenggang Yu, Valmik Desai, Li Cheng, Jaques Reifman BMC Bioinformatics 2012, 13:143 (22 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Role of long- and short-range hydrophobic, hydrophilic and charged residues contact network in protein’s structural organization Dhriti Sengupta, Sudip Kundu BMC Bioinformatics 2012, 13:142 (21 June 2012) Abstract \| Full text \| PDF \| PubMed
		Database The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools Andreas Wilke, Travis Harrison, Jared Wilkening, Dawn Field, Elizabeth M Glass, Nikos Kyrpides, Konstantinos Mavrommatis, Folker Meyer BMC Bioinformatics 2012, 13:141 (21 June 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments Ming Wen, Yang Shen, Suhua Shi, Tian Tang BMC Bioinformatics 2012, 13:140 (21 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Comparative study of classification algorithms for immunosignaturing data Muskan Kukreja, Stephen Johnston, Phillip Stafford BMC Bioinformatics 2012, 13:139 (21 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software EGNAS: an exhaustive DNA sequence design algorithm Alfred Kick, Martin Bönsch, Michael Mertig BMC Bioinformatics 2012, 13:138 (20 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article A Bayesian model for classifying all differentially expressed proteins simultaneously in 2D PAGE gels Steven H Wu, Michael A Black, Robyn A North, Allen G Rodrigo BMC Bioinformatics 2012, 13:137 (19 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Down-weighting overlapping genes improves gene set analysis Adi Tarca, Sorin Draghici, Gaurav Bhatti, Roberto Romero BMC Bioinformatics 2012, 13:136 (19 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article β-empirical Bayes inference and model diagnosis of microarray data Mohammad Hossain Mollah, M Haque Mollah, Hirohisa Kishino BMC Bioinformatics 2012, 13:135 (19 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction Jian Ye, George Coulouris, Irena Zaretskaya, Ioana Cutcutache, Steve Rozen, Thomas L Madden BMC Bioinformatics 2012, 13:134 (18 June 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software Bios2mds: an R package for comparing orthologous protein families by metric multidimensional scaling Julien Pelé, Jean-Michel Bécu, Hervé Abdi, Marie Chabbert BMC Bioinformatics 2012, 13:133 (15 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software Simulating gene-gene and gene-environment interactions in complex diseases: Gene-Environment iNteraction Simulator 2 Michele Pinelli, Giovanni Scala, Roberto Amato, Sergio Cocozza, Gennaro Miele BMC Bioinformatics 2012, 13:132 (14 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Gene regulatory network modeling via global optimization of high-order dynamic Bayesian network Nguyen Xuan, Madhu Chetty, Ross Coppel, Pramod P Wangikar BMC Bioinformatics 2012, 13:131 (13 June 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Methodology article Bayesian model to detect phenotype-specific genes for copy number data Juan R González, Carlos Abellán, Juan J Abellán BMC Bioinformatics 2012, 13:130 (13 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software Fast and robust multiple sequence alignment with phylogeny-aware gap placement Adam M Szalkowski BMC Bioinformatics 2012, 13:129 (13 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article ROCS: a Reproducibility Index and Confidence Score for Interaction Proteomics Studies Jean-Eudes Dazard, Sudipto Saha, Rob M Ewing BMC Bioinformatics 2012, 13:128 (8 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article The language of gene ontology: a Zipf’s law analysis Leila Kalankesh, Robert Stevens, Andy Brass BMC Bioinformatics 2012, 13:127 (7 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Identifying dysregulated pathways in cancers from pathway interaction networks Ke-Qin Liu, Zhi-Ping Liu, Jin-Kao Hao, Luonan Chen, Xing-Ming Zhao BMC Bioinformatics 2012, 13:126 (7 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software PollenCALC: Software for estimation of pollen compatibility of self-incompatible allo- and autotetraploid species Andrea Aguirre, Bernd Wollenweber, Ursula K Frei, Thomas Lübberstedt BMC Bioinformatics 2012, 13:125 (7 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software BioWord: A sequence manipulation suite for Microsoft Word Laura J Anzaldi, Daniel Muñoz-Fernández, Ivan Erill BMC Bioinformatics 2012, 13:124 (7 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software Quartet decomposition server: a platform for analyzing phylogenetic trees Fenglou Mao, David Williams, Olga Zhaxybayeva, Maria Poptsova, Pascal Lapierre, J Gogarten, Ying Xu BMC Bioinformatics 2012, 13:123 (7 June 2012) Abstract \| Full text \| PDF \| PubMed
		Software Web tools for large-scale 3D biological images and atlases Zsolt L Husz, Nicholas Burton, Bill Hill, Nestor Milyaev, Richard A Baldock BMC Bioinformatics 2012, 13:122 (7 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Detection of identity by descent using next-generation whole genome sequencing data Shu-Yi Su, Jay Kasberger, Sergio Baranzini, William Byerley, Wilson Liao, Jorge Oksenberg, Elliott Sherr, Eric Jorgenson BMC Bioinformatics 2012, 13:121 (6 June 2012) Abstract \| Full text \| PDF \| PubMed
		Research article On the hypothesis-free testing of metabolite ratios in genome-wide and metabolome-wide association studies Ann-Kristin Petersen, Jan Krumsiek, Brigitte Wägele, Fabian J Theis, H-Erich Wichmann, Christian Gieger, Karsten Suhre BMC Bioinformatics 2012, 13:120 (6 June 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Biomine: predicting links between biological entities using network models of heterogeneous databases Lauri Eronen, Hannu Toivonen BMC Bioinformatics 2012, 13:119 (6 June 2012) Abstract \| Full text \| PDF \| PubMed \| 1 comment
		Research article Predicting protein-ATP binding sites from primary sequence through fusing bi-profile sampling of multi-view features Ya-Nan Zhang, Dong-Jun Yu, Shu-Sen Li, Yong-Xian Fan, Yan Huang, Hong-Bin Shen BMC Bioinformatics 2012, 13:118 (31 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments Peter W Collingridge, Steven Kelly BMC Bioinformatics 2012, 13:117 (30 May 2012) Abstract \| Full text \| PDF \| PubMed
		Software OLSVis: an animated, interactive visual browser for bio-ontologies Steven Vercruysse, Aravind Venkatesan, Martin Kuiper BMC Bioinformatics 2012, 13:116 (30 May 2012) Abstract \| Full text \| PDF \| PubMed
		Software PyMS: a Python toolkit for processing of gas chromatography-mass spectrometry (GC-MS) data. Application and comparative study of selected tools Sean O'Callaghan, David P De Souza, Andrew Isaac, Qiao Wang, Luke Hodkinson, Moshe Olshansky, Tim Erwin, Bill Appelbe, Dedreia L Tull, Ute Roessner, Antony Bacic, Malcolm J McConville, Vladimir A Likić BMC Bioinformatics 2012, 13:115 (30 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Detection and correction of probe-level artefacts on microarrays Tobias Petri, Evi Berchtold, Ralf Zimmer, Caroline C Friedel BMC Bioinformatics 2012, 13:114 (30 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Molecular ecological network analyses Ye Deng, Yi-Huei Jiang, Yunfeng Yang, Zhili He, Feng Luo, Jizhong Zhou BMC Bioinformatics 2012, 13:113 (30 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs Suleiman A Khan, Ali Faisal, John Mpindi, Juuso A Parkkinen, Tuomo Kalliokoski, Antti Poso, Olli P Kallioniemi, Krister Wennerberg, Samuel Kaski BMC Bioinformatics 2012, 13:112 (30 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins Lukasz P Kozlowski, Janusz M Bujnicki BMC Bioinformatics 2012, 13:111 (24 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software TreeSnatcher plus: capturing phylogenetic trees from images Thomas Laubach, Arndt von Haeseler, Martin J Lercher BMC Bioinformatics 2012, 13:110 (24 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data Min Li, Xuehong Wu, Jianxin Wang, Yi Pan BMC Bioinformatics 2012, 13:109 (23 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Extracting semantically enriched events from biomedical literature Makoto Miwa, Paul Thompson, John McNaught, Douglas B Kell, Sophia Ananiadou BMC Bioinformatics 2012, 13:108 (23 May 2012) Abstract \| Full text \| PDF \| PubMed
		Research article Learning Sparse Representations for Fruit-Fly Gene Expression Pattern Image Annotation and Retrieval Lei Yuan, Alexander Woodard, Shuiwang Ji, Yuan Jiang, Zhi-Hua Zhou, Sudhir Kumar, Jieping Ye BMC Bioinformatics 2012, 13:107 (23 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Natural product-likeness score revisited: an open-source, open-data implementation Kalai Vanii, Pablo Moreno, Andreas Truszkowski, Peter Ertl, Christoph Steinbeck BMC Bioinformatics 2012, 13:106 (20 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software Multiple structure alignment with msTALI Paul Shealy, Homayoun Valafar BMC Bioinformatics 2012, 13:105 (20 May 2012) Abstract \| Full text \| PDF \| PubMed
		Methodology article Profile-based short linear protein motif discovery Niall J Haslam, Denis C Shields BMC Bioinformatics 2012, 13:104 (18 May 2012) Abstract \| Full text \| PDF \| PubMed
		Software rCUR: an R package for CUR matrix decomposition András Bodor, István Csabai, Michael W Mahoney, Norbert Solymosi BMC Bioinformatics 2012, 13:103 (17 May 2012) Abstract \| Full text \| PDF \| PubMed
		Software Workflows for microarray data processing in the Kepler environment Thomas Stropp, Timothy McPhillips, Bertram Ludäscher, Mark Bieda BMC Bioinformatics 2012, 13:102 (17 May 2012) Abstract \| Full text \| PDF \| PubMed