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		Research article Phamerator: a bioinformatic tool for comparative bacteriophage genomics Steven G Cresawn, Matt Bogel, Nathan Day, Deborah Jacobs-Sera, Roger W Hendrix, Graham F Hatfull BMC Bioinformatics 2011, 12:395 (12 October 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article Improving probe set selection for microbial community analysis by leveraging taxonomic information of training sequences Paul M Ruegger, Gianluca Della Vedova, Tao Jiang, James Borneman BMC Bioinformatics 2011, 12:394 (10 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Enriching a biomedical event corpus with meta-knowledge annotation Paul Thompson, Raheel Nawaz, John McNaught, Sophia Ananiadou BMC Bioinformatics 2011, 12:393 (10 October 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary An annotation scheme for meta-knowledge enrichment of biomedical event corpora achieves high levels of inter-annotator agreement when applied to the GENIA event corpus, and facilitates more sophisticated training of information extraction systems.
		Research article An empirical Bayes model using a competition score for metabolite identification in gas chromatography mass spectrometry Jaesik Jeong, Xue Shi, Xiang Zhang, Seongho Kim, Changyu Shen BMC Bioinformatics 2011, 12:392 (10 October 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Microarray-based cancer prediction using single genes Xiaosheng Wang, Richard Simon BMC Bioinformatics 2011, 12:391 (7 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Classification of microarrays; synergistic effects between normalization, gene selection and machine learning Jenny Önskog, Eva Freyhult, Mattias Landfors, Patrik Rydén, Torgeir R Hvidsten BMC Bioinformatics 2011, 12:390 (7 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research article ProDiGe: Prioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples Fantine Mordelet, Jean-Philippe Vert BMC Bioinformatics 2011, 12:389 (6 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research article iRefScape. A Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex Sabry Razick, Antonio Mora, Katerina Michalickova, Paul Boddie, Ian M Donaldson BMC Bioinformatics 2011, 12:388 (5 October 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software Biblio-MetReS: A bibliometric network reconstruction application and server Anabel Usié, Hiren Karathia, Ivan Teixidó, Joan Valls, Xavier Faus, Rui Alves, Francesc Solsona BMC Bioinformatics 2011, 12:387 (5 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Cross-validated stepwise regression for identification of novel non-nucleoside reverse transcriptase inhibitor resistance associated mutations Koen Van der Borght, Elke Van Craenenbroeck, Pierre Lecocq, Margriet Van Houtte, Barbara Van Kerckhove, Lee Bacheler, Geert Verbeke, Herman van Vlijmen BMC Bioinformatics 2011, 12:386 (3 October 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software Interactive metagenomic visualization in a Web browser Brian D Ondov, Nicholas H Bergman, Adam M Phillippy BMC Bioinformatics 2011, 12:385 (30 September 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Methodology article Multilocus association mapping using generalized ridge logistic regression Zhe Liu, Yuanyuan Shen, Jurg Ott BMC Bioinformatics 2011, 12:384 (29 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts Richard A Moffitt, Qiqin Yin-Goen, Todd H Stokes, R Parry, James H Torrance, John H Phan, Andrew N Young, May D Wang BMC Bioinformatics 2011, 12:383 (29 September 2011) Abstract \| Full text \| PDF \| PubMed
		Software Mulcom: a multiple comparison statistical test for microarray data in Bioconductor Claudio Isella, Tommaso Renzulli, Davide Corà, Enzo Medico BMC Bioinformatics 2011, 12:382 (28 September 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article Discovering biological connections between experimental conditions based on common patterns of differential gene expression Adam C Gower, Avrum Spira, Marc E Lenburg BMC Bioinformatics 2011, 12:381 (27 September 2011) Abstract \| Full text \| PDF \| PubMed
		Software iCTNet: A Cytoscape plugin to produce and analyze integrative complex traits networks Lili Wang, Pouya Khankhanian, Sergio E Baranzini, Parvin Mousavi BMC Bioinformatics 2011, 12:380 (26 September 2011) Abstract \| Full text \| PDF \| PubMed
		Software GOmotif: A web server for investigating the biological role of protein sequence motifs Franklin Bristow, Runtao He, Gary Van Domselaar BMC Bioinformatics 2011, 12:379 (26 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Prediction of protein-binding areas by small-world residue networks and application to docking Carles Pons, Fabian Glaser, Juan Fernandez-Recio BMC Bioinformatics 2011, 12:378 (26 September 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article A comparative study on gene-set analysis methods for assessing differential expression associated with the survival phenotype Seungyeoun Lee, Jinheum Kim, Sunho Lee BMC Bioinformatics 2011, 12:377 (26 September 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Database EnzymeDetector: an integrated enzyme function prediction tool and database Susanne Quester, Dietmar Schomburg BMC Bioinformatics 2011, 12:376 (23 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Top scoring pairs for feature selection in machine learning and applications to cancer outcome prediction Ping Shi, Surajit Ray, Qifu Zhu, Mark A Kon BMC Bioinformatics 2011, 12:375 (23 September 2011) Abstract \| Full text \| PDF \| PubMed
		Software Hierarchical Parallelization of Gene Differential Association Analysis Mark Needham, Rui Hu, Sandhya Dwarkadas, Xing Qiu BMC Bioinformatics 2011, 12:374 (21 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Quantification of protein group coherence and pathway assignment using functional association Meghana Chitale, Shriphani Palakodety, Daisuke Kihara BMC Bioinformatics 2011, 12:373 (19 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Significance testing in ridge regression for genetic data Erika Cule, Paolo Vineis, Maria De Iorio BMC Bioinformatics 2011, 12:372 (19 September 2011) Abstract \| Full text \| PDF \| PubMed
		Database The representation of protein complexes in the Protein Ontology (PRO) Carol J Bult, Harold J Drabkin, Alexei Evsikov, Darren Natale, Cecilia Arighi, Natalia Roberts, Alan Ruttenberg, Peter D'Eustachio, Barry Smith, Judith A Blake, Cathy Wu BMC Bioinformatics 2011, 12:371 (19 September 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary ProComp is a component of the Protein Ontology (PRO) database for implementing a logical and consistent representation of protein complexes, and facilitates robust annotation of variations in composition and function contexts within and between species
		Methodology article Toponomics method for the automated quantification of membrane protein translocation Olga Domanova, Stefan Borbe, Stefanie Mühlfeld, Martin Becker, Ralf Kubitz, Dieter Häussinger, Thomas Berlage BMC Bioinformatics 2011, 12:370 (19 September 2011) Abstract \| Full text \| PDF \| PubMed
		Software Thawing Frozen Robust Multi-array Analysis (fRMA) Matthew N McCall, Rafael A Irizarry BMC Bioinformatics 2011, 12:369 (16 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article LoCo: a novel main chain scoring function for protein structure prediction based on local coordinates Stewart E Moughon, Ram Samudrala BMC Bioinformatics 2011, 12:368 (15 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Methodology and software to detect viral integration site hot-spots Angela P Presson, Namshin Kim, Yan Xiaofei, Irvin SY Chen, Sanggu Kim BMC Bioinformatics 2011, 12:367 (14 September 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article MetaboLab - advanced NMR data processing and analysis for metabolomics Christian Ludwig, Ulrich L Günther BMC Bioinformatics 2011, 12:366 (13 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Simple Shared Motifs (SSM) in conserved region of promoters: a new approach to identify co-regulation patterns Jérémy Gruel, Michel LeBorgne, Nolwenn LeMeur, Nathalie Théret BMC Bioinformatics 2011, 12:365 (12 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Characterizing genetic interactions in human disease association studies using statistical epistasis networks Ting Hu, Nicholas A Sinnott-Armstrong, Jeff W Kiralis, Angeline S Andrew, Margaret R Karagas, Jason H Moore BMC Bioinformatics 2011, 12:364 (12 September 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Selection of organisms for the co-evolution-based study of protein interactions Dorota Herman, David Ochoa, David Juan, Daniel Lopez, Alfonso Valencia, Florencio Pazos BMC Bioinformatics 2011, 12:363 (12 September 2011) Abstract \| Full text \| PDF \| PubMed
		Software Integrating GPCR-specific information with full text articles Bas Vroling, David Thorne, Philip McDermott, Teresa K Attwood, Gert Vriend, Steve Pettifer BMC Bioinformatics 2011, 12:362 (12 September 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Correspondence Implementing a genomic data management system using iRODS in the Wellcome Trust Sanger Institute Gen-Tao Chiang, Peter Clapham, Guoying Qi, Kevin Sale, Guy Coates BMC Bioinformatics 2011, 12:361 (9 September 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article GO-based Functional Dissimilarity of Gene Sets Norberto Díaz-Díaz, Jesús S Aguilar-Ruiz BMC Bioinformatics 2011, 12:360 (1 September 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article Quantitative utilization of prior biological knowledge in the Bayesian network modeling of gene expression data Shouguo Gao, Xujing Wang BMC Bioinformatics 2011, 12:359 (31 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Clustering with position-specific constraints on variance: Applying redescending M-estimators to label-free LC-MS data analysis Rudolf Frühwirth, D R Mani, Saumyadipta Pyne BMC Bioinformatics 2011, 12:358 (31 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research article An integrative approach to ortholog prediction for disease-focused and other functional studies Yanhui Hu, Ian Flockhart, Arunachalam Vinayagam, Clemens Bergwitz, Bonnie Berger, Norbert Perrimon, Stephanie E Mohr BMC Bioinformatics 2011, 12:357 (31 August 2011) Abstract \| Full text \| PDF \| PubMed
		Software CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing Samuel V Angiuoli, Malcolm Matalka, Aaron Gussman, Kevin Galens, Mahesh Vangala, David R Riley, Cesar Arze, James R White, Owen White, W Florian Fricke BMC Bioinformatics 2011, 12:356 (30 August 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 1 comment \| Editor’s summary Cloud Virtual Resource (CloVR) is a new desktop application for large-scale sequence analysis using remote computing resources that provides several automated pipelines for microbial genomics, including 16S, whole genome and metagenome sequence analysis.
		Research article Studying the correlation between different word sense disambiguation methods and summarization effectiveness in biomedical texts Laura Plaza, Antonio J Jimeno-Yepes, Alberto Díaz, Alan R Aronson BMC Bioinformatics 2011, 12:355 (26 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Parallelized short read assembly of large genomes using de Bruijn graphs Yongchao Liu, Bertil Schmidt, Douglas L Maskell BMC Bioinformatics 2011, 12:354 (25 August 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Vertical decomposition with Genetic Algorithm for Multiple Sequence Alignment Farhana Naznin, Ruhul Sarker, Daryl Essam BMC Bioinformatics 2011, 12:353 (25 August 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi diagrams Joan Segura, Pamela F Jones, Narcis Fernandez-Fuentes BMC Bioinformatics 2011, 12:352 (23 August 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software Knowledge engineering tools for reasoning with scientific observations and interpretations: a neural connectivity use case Thomas A Russ, Cartic Ramakrishnan, Eduard H Hovy, Mihail Bota, Gully APC Burns BMC Bioinformatics 2011, 12:351 (22 August 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software Haplo2Ped: a tool using haplotypes as markers for linkage analysis Feng Cheng, Xianglong Zhang, Yinan Zhang, Chaohua Li, Changqing Zeng BMC Bioinformatics 2011, 12:350 (22 August 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article Statistical methods for analyzing immunosignatures Justin R Brown, Phillip Stafford, Stephen A Johnston, Valentin Dinu BMC Bioinformatics 2011, 12:349 (19 August 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking Irina Tuszynska, Janusz M Bujnicki BMC Bioinformatics 2011, 12:348 (18 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series Yuan Yuan, Yi-Ping Chen, Shengyu Ni, Augix Xu, Lin Tang, Martin Vingron, Mehmet Somel, Philipp Khaitovich BMC Bioinformatics 2011, 12:347 (18 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research article ProbPS: A new model for peak selection based on quantifying the dependence of the existence of derivative peaks on primary ion intensity Shenghui Zhang, Yaojun Wang, Dongbo Bu, Hong Zhang, Shiwei Sun BMC Bioinformatics 2011, 12:346 (17 August 2011) Abstract \| Full text \| PDF \| PubMed

	All
		Research article Phamerator: a bioinformatic tool for comparative bacteriophage genomics Steven G Cresawn, Matt Bogel, Nathan Day, Deborah Jacobs-Sera, Roger W Hendrix, Graham F Hatfull BMC Bioinformatics 2011, 12:395 (12 October 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article Improving probe set selection for microbial community analysis by leveraging taxonomic information of training sequences Paul M Ruegger, Gianluca Della Vedova, Tao Jiang, James Borneman BMC Bioinformatics 2011, 12:394 (10 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Enriching a biomedical event corpus with meta-knowledge annotation Paul Thompson, Raheel Nawaz, John McNaught, Sophia Ananiadou BMC Bioinformatics 2011, 12:393 (10 October 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary An annotation scheme for meta-knowledge enrichment of biomedical event corpora achieves high levels of inter-annotator agreement when applied to the GENIA event corpus, and facilitates more sophisticated training of information extraction systems.
		Research article An empirical Bayes model using a competition score for metabolite identification in gas chromatography mass spectrometry Jaesik Jeong, Xue Shi, Xiang Zhang, Seongho Kim, Changyu Shen BMC Bioinformatics 2011, 12:392 (10 October 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Microarray-based cancer prediction using single genes Xiaosheng Wang, Richard Simon BMC Bioinformatics 2011, 12:391 (7 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Classification of microarrays; synergistic effects between normalization, gene selection and machine learning Jenny Önskog, Eva Freyhult, Mattias Landfors, Patrik Rydén, Torgeir R Hvidsten BMC Bioinformatics 2011, 12:390 (7 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research article ProDiGe: Prioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples Fantine Mordelet, Jean-Philippe Vert BMC Bioinformatics 2011, 12:389 (6 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research article iRefScape. A Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex Sabry Razick, Antonio Mora, Katerina Michalickova, Paul Boddie, Ian M Donaldson BMC Bioinformatics 2011, 12:388 (5 October 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software Biblio-MetReS: A bibliometric network reconstruction application and server Anabel Usié, Hiren Karathia, Ivan Teixidó, Joan Valls, Xavier Faus, Rui Alves, Francesc Solsona BMC Bioinformatics 2011, 12:387 (5 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Cross-validated stepwise regression for identification of novel non-nucleoside reverse transcriptase inhibitor resistance associated mutations Koen Van der Borght, Elke Van Craenenbroeck, Pierre Lecocq, Margriet Van Houtte, Barbara Van Kerckhove, Lee Bacheler, Geert Verbeke, Herman van Vlijmen BMC Bioinformatics 2011, 12:386 (3 October 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software Interactive metagenomic visualization in a Web browser Brian D Ondov, Nicholas H Bergman, Adam M Phillippy BMC Bioinformatics 2011, 12:385 (30 September 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Methodology article Multilocus association mapping using generalized ridge logistic regression Zhe Liu, Yuanyuan Shen, Jurg Ott BMC Bioinformatics 2011, 12:384 (29 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts Richard A Moffitt, Qiqin Yin-Goen, Todd H Stokes, R Parry, James H Torrance, John H Phan, Andrew N Young, May D Wang BMC Bioinformatics 2011, 12:383 (29 September 2011) Abstract \| Full text \| PDF \| PubMed
		Software Mulcom: a multiple comparison statistical test for microarray data in Bioconductor Claudio Isella, Tommaso Renzulli, Davide Corà, Enzo Medico BMC Bioinformatics 2011, 12:382 (28 September 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article Discovering biological connections between experimental conditions based on common patterns of differential gene expression Adam C Gower, Avrum Spira, Marc E Lenburg BMC Bioinformatics 2011, 12:381 (27 September 2011) Abstract \| Full text \| PDF \| PubMed
		Software iCTNet: A Cytoscape plugin to produce and analyze integrative complex traits networks Lili Wang, Pouya Khankhanian, Sergio E Baranzini, Parvin Mousavi BMC Bioinformatics 2011, 12:380 (26 September 2011) Abstract \| Full text \| PDF \| PubMed
		Software GOmotif: A web server for investigating the biological role of protein sequence motifs Franklin Bristow, Runtao He, Gary Van Domselaar BMC Bioinformatics 2011, 12:379 (26 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Prediction of protein-binding areas by small-world residue networks and application to docking Carles Pons, Fabian Glaser, Juan Fernandez-Recio BMC Bioinformatics 2011, 12:378 (26 September 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article A comparative study on gene-set analysis methods for assessing differential expression associated with the survival phenotype Seungyeoun Lee, Jinheum Kim, Sunho Lee BMC Bioinformatics 2011, 12:377 (26 September 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Database EnzymeDetector: an integrated enzyme function prediction tool and database Susanne Quester, Dietmar Schomburg BMC Bioinformatics 2011, 12:376 (23 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Top scoring pairs for feature selection in machine learning and applications to cancer outcome prediction Ping Shi, Surajit Ray, Qifu Zhu, Mark A Kon BMC Bioinformatics 2011, 12:375 (23 September 2011) Abstract \| Full text \| PDF \| PubMed
		Software Hierarchical Parallelization of Gene Differential Association Analysis Mark Needham, Rui Hu, Sandhya Dwarkadas, Xing Qiu BMC Bioinformatics 2011, 12:374 (21 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Quantification of protein group coherence and pathway assignment using functional association Meghana Chitale, Shriphani Palakodety, Daisuke Kihara BMC Bioinformatics 2011, 12:373 (19 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Significance testing in ridge regression for genetic data Erika Cule, Paolo Vineis, Maria De Iorio BMC Bioinformatics 2011, 12:372 (19 September 2011) Abstract \| Full text \| PDF \| PubMed
		Database The representation of protein complexes in the Protein Ontology (PRO) Carol J Bult, Harold J Drabkin, Alexei Evsikov, Darren Natale, Cecilia Arighi, Natalia Roberts, Alan Ruttenberg, Peter D'Eustachio, Barry Smith, Judith A Blake, Cathy Wu BMC Bioinformatics 2011, 12:371 (19 September 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary ProComp is a component of the Protein Ontology (PRO) database for implementing a logical and consistent representation of protein complexes, and facilitates robust annotation of variations in composition and function contexts within and between species
		Methodology article Toponomics method for the automated quantification of membrane protein translocation Olga Domanova, Stefan Borbe, Stefanie Mühlfeld, Martin Becker, Ralf Kubitz, Dieter Häussinger, Thomas Berlage BMC Bioinformatics 2011, 12:370 (19 September 2011) Abstract \| Full text \| PDF \| PubMed
		Software Thawing Frozen Robust Multi-array Analysis (fRMA) Matthew N McCall, Rafael A Irizarry BMC Bioinformatics 2011, 12:369 (16 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article LoCo: a novel main chain scoring function for protein structure prediction based on local coordinates Stewart E Moughon, Ram Samudrala BMC Bioinformatics 2011, 12:368 (15 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Methodology and software to detect viral integration site hot-spots Angela P Presson, Namshin Kim, Yan Xiaofei, Irvin SY Chen, Sanggu Kim BMC Bioinformatics 2011, 12:367 (14 September 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article MetaboLab - advanced NMR data processing and analysis for metabolomics Christian Ludwig, Ulrich L Günther BMC Bioinformatics 2011, 12:366 (13 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Simple Shared Motifs (SSM) in conserved region of promoters: a new approach to identify co-regulation patterns Jérémy Gruel, Michel LeBorgne, Nolwenn LeMeur, Nathalie Théret BMC Bioinformatics 2011, 12:365 (12 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Characterizing genetic interactions in human disease association studies using statistical epistasis networks Ting Hu, Nicholas A Sinnott-Armstrong, Jeff W Kiralis, Angeline S Andrew, Margaret R Karagas, Jason H Moore BMC Bioinformatics 2011, 12:364 (12 September 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Selection of organisms for the co-evolution-based study of protein interactions Dorota Herman, David Ochoa, David Juan, Daniel Lopez, Alfonso Valencia, Florencio Pazos BMC Bioinformatics 2011, 12:363 (12 September 2011) Abstract \| Full text \| PDF \| PubMed
		Software Integrating GPCR-specific information with full text articles Bas Vroling, David Thorne, Philip McDermott, Teresa K Attwood, Gert Vriend, Steve Pettifer BMC Bioinformatics 2011, 12:362 (12 September 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Correspondence Implementing a genomic data management system using iRODS in the Wellcome Trust Sanger Institute Gen-Tao Chiang, Peter Clapham, Guoying Qi, Kevin Sale, Guy Coates BMC Bioinformatics 2011, 12:361 (9 September 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article GO-based Functional Dissimilarity of Gene Sets Norberto Díaz-Díaz, Jesús S Aguilar-Ruiz BMC Bioinformatics 2011, 12:360 (1 September 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article Quantitative utilization of prior biological knowledge in the Bayesian network modeling of gene expression data Shouguo Gao, Xujing Wang BMC Bioinformatics 2011, 12:359 (31 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Clustering with position-specific constraints on variance: Applying redescending M-estimators to label-free LC-MS data analysis Rudolf Frühwirth, D R Mani, Saumyadipta Pyne BMC Bioinformatics 2011, 12:358 (31 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research article An integrative approach to ortholog prediction for disease-focused and other functional studies Yanhui Hu, Ian Flockhart, Arunachalam Vinayagam, Clemens Bergwitz, Bonnie Berger, Norbert Perrimon, Stephanie E Mohr BMC Bioinformatics 2011, 12:357 (31 August 2011) Abstract \| Full text \| PDF \| PubMed
		Software CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing Samuel V Angiuoli, Malcolm Matalka, Aaron Gussman, Kevin Galens, Mahesh Vangala, David R Riley, Cesar Arze, James R White, Owen White, W Florian Fricke BMC Bioinformatics 2011, 12:356 (30 August 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 1 comment \| Editor’s summary Cloud Virtual Resource (CloVR) is a new desktop application for large-scale sequence analysis using remote computing resources that provides several automated pipelines for microbial genomics, including 16S, whole genome and metagenome sequence analysis.
		Research article Studying the correlation between different word sense disambiguation methods and summarization effectiveness in biomedical texts Laura Plaza, Antonio J Jimeno-Yepes, Alberto Díaz, Alan R Aronson BMC Bioinformatics 2011, 12:355 (26 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Parallelized short read assembly of large genomes using de Bruijn graphs Yongchao Liu, Bertil Schmidt, Douglas L Maskell BMC Bioinformatics 2011, 12:354 (25 August 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research article Vertical decomposition with Genetic Algorithm for Multiple Sequence Alignment Farhana Naznin, Ruhul Sarker, Daryl Essam BMC Bioinformatics 2011, 12:353 (25 August 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi diagrams Joan Segura, Pamela F Jones, Narcis Fernandez-Fuentes BMC Bioinformatics 2011, 12:352 (23 August 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software Knowledge engineering tools for reasoning with scientific observations and interpretations: a neural connectivity use case Thomas A Russ, Cartic Ramakrishnan, Eduard H Hovy, Mihail Bota, Gully APC Burns BMC Bioinformatics 2011, 12:351 (22 August 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software Haplo2Ped: a tool using haplotypes as markers for linkage analysis Feng Cheng, Xianglong Zhang, Yinan Zhang, Chaohua Li, Changqing Zeng BMC Bioinformatics 2011, 12:350 (22 August 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology article Statistical methods for analyzing immunosignatures Justin R Brown, Phillip Stafford, Stephen A Johnston, Valentin Dinu BMC Bioinformatics 2011, 12:349 (19 August 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Software DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking Irina Tuszynska, Janusz M Bujnicki BMC Bioinformatics 2011, 12:348 (18 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research article Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series Yuan Yuan, Yi-Ping Chen, Shengyu Ni, Augix Xu, Lin Tang, Martin Vingron, Mehmet Somel, Philipp Khaitovich BMC Bioinformatics 2011, 12:347 (18 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research article ProbPS: A new model for peak selection based on quantifying the dependence of the existence of derivative peaks on primary ion intensity Shenghui Zhang, Yaojun Wang, Dongbo Bu, Hong Zhang, Shiwei Sun BMC Bioinformatics 2011, 12:346 (17 August 2011) Abstract \| Full text \| PDF \| PubMed