Articles
Volume 8 (2007) - November 2007
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Research article
Domain motions of Argonaute, the catalytic engine of RNA interference Dengming Ming, Michael E Wall, Kevin Y Sanbonmatsu BMC Bioinformatics 2007, 8:470 (30 November 2007) |
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Research article
A structural analysis of Yu Shao, Susan Wu, Chi Chan, Jessie R Klapper, Erasmus Schneider, Ye Ding BMC Bioinformatics 2007, 8:469 (30 November 2007) |
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Research article
Nico Pfeifer, Andreas Leinenbach, Christian G Huber, Oliver Kohlbacher BMC Bioinformatics 2007, 8:468 (30 November 2007) |
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Methodology article
Generating confidence intervals on biological networks Thomas Thorne, Michael PH Stumpf BMC Bioinformatics 2007, 8:467 (30 November 2007) |
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Research article
Takeyuki Tamura, Tatsuya Akutsu BMC Bioinformatics 2007, 8:466 (30 November 2007) |
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Software
SAT, a flexible and optimized Web application for SSR marker development Alexis Dereeper, Xavier Argout, Claire Billot, Jean-François Rami, Manuel Ruiz BMC Bioinformatics 2007, 8:465 (29 November 2007) |
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Research article
Stéfan Engelen, Fariza Tahi BMC Bioinformatics 2007, 8:464 (28 November 2007) |
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Research article
Identification of DNA-binding proteins using support vector machines and evolutionary profiles Manish Kumar, Michael M Gromiha, Gajendra PS Raghava BMC Bioinformatics 2007, 8:463 (27 November 2007) |
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Software
Dynamic simulation of regulatory networks using SQUAD Alessandro Di Cara, Abhishek Garg, Giovanni De Micheli, Ioannis Xenarios, Luis Mendoza BMC Bioinformatics 2007, 8:462 (26 November 2007) |
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Research article
In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation Tineke Casneuf, Yves Van de Peer, Wolfgang Huber BMC Bioinformatics 2007, 8:461 (26 November 2007) |
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Software
Dendroscope: An interactive viewer for large phylogenetic trees Daniel H Huson, Daniel C Richter, Christian Rausch, Tobias Dezulian, Markus Franz, Regula Rupp BMC Bioinformatics 2007, 8:460 (22 November 2007) |
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Research article
Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms Menaka Rajapakse, Bertil Schmidt, Lin Feng, Vladimir Brusic BMC Bioinformatics 2007, 8:459 (22 November 2007) |
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Software
Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography Miguel Arenas, David Posada BMC Bioinformatics 2007, 8:458 (20 November 2007) |
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Software
GEDI: a user-friendly toolbox for analysis of large-scale gene expression data André Fujita, João R Sato, Carlos E Ferreira, Mari C Sogayar BMC Bioinformatics 2007, 8:457 (19 November 2007) |
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Software
J Christopher Bare, Paul T Shannon, Amy K Schmid, Nitin S Baliga BMC Bioinformatics 2007, 8:456 (19 November 2007) |
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Research article
Carmen Pin, Mark Reuter BMC Bioinformatics 2007, 8:455 (19 November 2007) |
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Methodology article
Henning Redestig, Daniel Weicht, Joachim Selbig, Matthew A Hannah BMC Bioinformatics 2007, 8:454 (18 November 2007) |
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Methodology article
Tae-Min Kim, Yeun-Jun Chung, Mun-Gan Rhyu, Myeong Ho Jung BMC Bioinformatics 2007, 8:453 (17 November 2007) |
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Methodology article
Chao Cheng, Xiting Yan, Fengzhu Sun, Lei M Li BMC Bioinformatics 2007, 8:452 (16 November 2007) |
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Research article
Peptide ligand screening of α-synuclein aggregation modulators by Koichi Abe, Natsuki Kobayashi, Koji Sode, Kazunori Ikebukuro BMC Bioinformatics 2007, 8:451 (16 November 2007) |
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Software
Jian Tian, Ningfeng Wu, Xuexia Guo, Jun Guo, Juhua Zhang, Yunliu Fan BMC Bioinformatics 2007, 8:450 (16 November 2007) |
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Research article
A comparison of Affymetrix gene expression arrays Mark D Robinson, Terence P Speed BMC Bioinformatics 2007, 8:449 (15 November 2007) |
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Software
PedGenie: meta genetic association testing in mixed family and case-control designs Karen Curtin, Jathine Wong, Kristina Allen-Brady, Nicola J Camp BMC Bioinformatics 2007, 8:448 (15 November 2007) |
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Research article
Application of a correlation correction factor in a microarray cross-platform reproducibility study Kellie J Archer, Catherine I Dumur, G Scott Taylor, Michael D Chaplin, Anthony Guiseppi-Elie, Geraldine Grant, Andrea Ferreira-Gonzalez, Carleton T Garrett BMC Bioinformatics 2007, 8:447 (15 November 2007) |
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Software
Novel definition files for human GeneChips based on GeneAnnot Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Danieli, Silvio Bicciato BMC Bioinformatics 2007, 8:446 (15 November 2007) |
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Research article
Xochitl C Morgan, Shulin Ni, Daniel P Miranker, Vishwanath R Iyer BMC Bioinformatics 2007, 8:445 (15 November 2007) |
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Research article
Haiyan Jiang, Christian Blouin BMC Bioinformatics 2007, 8:444 (15 November 2007) The emergence of new protein domains can be traced by constructing phylogenetic trees based on 3D structures, revealing that structural innovation derives from insertion events followed by further sequence evolution.
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Correction
Ringo – an R/Bioconductor package for analyzing ChIP-chip readouts Joern Toedling, Oleg Skylar, Tammo Krueger, Jenny J Fischer, Silke Sperling, Wolfgang Huber BMC Bioinformatics 2007, 8:443 (15 November 2007) |
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Methodology article
Antonio Marco, Ignacio Marín BMC Bioinformatics 2007, 8:442 (15 November 2007) |
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Database
Konstantin Popadin, Leila A Mamirova, Fyodor A Kondrashov BMC Bioinformatics 2007, 8:441 (14 November 2007) |
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Methodology article
Francois Besnier, Örjan Carlborg BMC Bioinformatics 2007, 8:440 (13 November 2007) |
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Software
BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips Ernest Turro, Natalia Bochkina, Anne-Mette K Hein, Sylvia Richardson BMC Bioinformatics 2007, 8:439 (12 November 2007) |
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Research article
Glycosylation site prediction using ensembles of Support Vector Machine classifiers Cornelia Caragea, Jivko Sinapov, Adrian Silvescu, Drena Dobbs, Vasant Honavar BMC Bioinformatics 2007, 8:438 (9 November 2007) |
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Research article
Xueping Yu, Jimmy Lin, Donald J Zack, Jiang Qian BMC Bioinformatics 2007, 8:437 (9 November 2007) Cis-regulatory regions can be found regardless of sequence conservation by grouping sets of interacting transcription factors, which can pin-point tissue-specific cis-regulatory modules.
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Methodology article
Wei Yu, Ajay Yesupriya, Anja Wulf, Junfeng Qu, Muin J Khoury, Marta Gwinn BMC Bioinformatics 2007, 8:436 (9 November 2007) |
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Research article
Juliana S Bernardes, Alberto MR Dávila, Vítor S Costa, Gerson Zaverucha BMC Bioinformatics 2007, 8:435 (9 November 2007) |
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Methodology article
Philippe Lamy, Claus L Andersen, Lars Dyrskjot, Niels Torring, Carsten Wiuf BMC Bioinformatics 2007, 8:434 (9 November 2007) |
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Research article
Incremental and unifying modelling formalism for biological interaction networks Anastasia Yartseva, Hanna Klaudel, Raymond Devillers, François Képès BMC Bioinformatics 2007, 8:433 (8 November 2007) |
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Research article
Identifications of conserved 7-mers in 3'-UTRs and microRNAs in Jin Gu, Hu Fu, Xuegong Zhang, Yanda Li BMC Bioinformatics 2007, 8:432 (8 November 2007) |
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Methodology article
Comparative evaluation of gene-set analysis methods Qi Liu, Irina Dinu, Adeniyi J Adewale, John D Potter, Yutaka Yasui BMC Bioinformatics 2007, 8:431 (7 November 2007) |
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Research article
Analysis of feedback loops and robustness in network evolution based on Boolean models Yung-Keun Kwon, Kwang-Hyun Cho BMC Bioinformatics 2007, 8:430 (7 November 2007) |
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Database
CoryneRegNet 4.0 – A reference database for corynebacterial gene regulatory networks Jan Baumbach BMC Bioinformatics 2007, 8:429 (6 November 2007) |
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Software
Tom R Gaunt, Santiago Rodríguez, Ian NM Day BMC Bioinformatics 2007, 8:428 (2 November 2007) |
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Research article
Jeff W Chou, Tong Zhou, William K Kaufmann, Richard S Paules, Pierre R Bushel BMC Bioinformatics 2007, 8:427 (2 November 2007) |
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Database
Brad T Sherman, Da Huang, Qina Tan, Yongjian Guo, Stephan Bour, David Liu, Robert Stephens, Michael W Baseler, H Clifford Lane, Richard A Lempicki BMC Bioinformatics 2007, 8:426 (2 November 2007) |
