Articles
Volume 8 (2007) - March 2007
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Research article
Locational distribution of gene functional classes in Michael C Riley, Amanda Clare, Ross D King BMC Bioinformatics 2007, 8:112 (30 March 2007) |
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Research article
Evaluation of gene-expression clustering via mutual information distance measure Ido Priness, Oded Maimon, Irad Ben-Gal BMC Bioinformatics 2007, 8:111 (30 March 2007) |
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Methodology article
Fast automated cell phenotype image classification Nicholas A Hamilton, Radosav S Pantelic, Kelly Hanson, Rohan D Teasdale BMC Bioinformatics 2007, 8:110 (30 March 2007) |
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Research article
A meta-data based method for DNA microarray imputation Rebecka Jörnsten, Ming Ouyang, Hui-Yu Wang BMC Bioinformatics 2007, 8:109 (29 March 2007) |
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Methodology article
Jun Lu, Joseph C Lee, Marc L Salit, Margaret C Cam BMC Bioinformatics 2007, 8:108 (29 March 2007) |
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Research article
John P Rasmussen, Christopher P Saint, Paul T Monis BMC Bioinformatics 2007, 8:107 (29 March 2007) |
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Research article
Discovering structural motifs using a structural alphabet: Application to magnesium-binding sites Minko Dudev, Carmay Lim BMC Bioinformatics 2007, 8:106 (28 March 2007) |
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Research article
Tobias Kind, Oliver Fiehn BMC Bioinformatics 2007, 8:105 (27 March 2007) An algorithm based on seven heuristic rules can predict the structure of small unknown molecules from mass spectrometry data, with a 98% probability of being correct when the compound is in a database.
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Methodology article
Prashant K Srivastava, Dhwani K Desai, Soumyadeep Nandi, Andrew M Lynn BMC Bioinformatics 2007, 8:104 (27 March 2007) |
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Software
Modeling biochemical transformation processes and information processing with Narrator Johannes J Mandel, Hendrik Fuß, Niall M Palfreyman, Werner Dubitzky BMC Bioinformatics 2007, 8:103 (27 March 2007) |
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Research article
SAMPI: Protein Identification with Mass Spectra Alignments Hans-Michael Kaltenbach, Andreas Wilke, Sebastian Böcker BMC Bioinformatics 2007, 8:102 (26 March 2007) |
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Methodology article
LIMPIC: a computational method for the separation of protein MALDI-TOF-MS signals from noise Dante Mantini, Francesca Petrucci, Damiana Pieragostino, Piero Del Boccio, Marta Di Nicola, Carmine Di Ilio, Giorgio Federici, Paolo Sacchetta, Silvia Comani, Andrea Urbani BMC Bioinformatics 2007, 8:101 (26 March 2007) |
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Software
MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs Mamoru Kato, Tatsuhiko Tsunoda BMC Bioinformatics 2007, 8:100 (22 March 2007) |
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Research article
In silico segmentations of lentivirus envelope sequences Aurélia Boissin-Quillon, Didier Piau, Caroline Leroux BMC Bioinformatics 2007, 8:99 (21 March 2007) |
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Research article
Including probe-level uncertainty in model-based gene expression clustering Xuejun Liu, Kevin K Lin, Bogi Andersen, Magnus Rattray BMC Bioinformatics 2007, 8:98 (21 March 2007) |
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Methodology article
MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes Huaiqiu Zhu, Gang-Qing Hu, Yi-Fan Yang, Jin Wang, Zhen-Su She BMC Bioinformatics 2007, 8:97 (16 March 2007) |
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Research article
César L Avila, Viviana A Rapisarda, Ricardo N Farías, Javier De Las Rivas, Rosana Chehín BMC Bioinformatics 2007, 8:96 (16 March 2007) |
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Database
The reactive metabolite target protein database (TPDB) – a web-accessible resource Robert P Hanzlik, Yakov M Koen, Bhargav Theertham, Yinghua Dong, Jianwen Fang BMC Bioinformatics 2007, 8:95 (16 March 2007) |
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Software
Non-coding sequence retrieval system for comparative genomic analysis of gene regulatory elements Sung Doh, Yunyu Zhang, Matthew H Temple, Li Cai BMC Bioinformatics 2007, 8:94 (15 March 2007) |
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Methodology article
Normalization method for metabolomics data using optimal selection of multiple internal standards Marko Sysi-Aho, Mikko Katajamaa, Laxman Yetukuri, Matej Orešič BMC Bioinformatics 2007, 8:93 (15 March 2007) |
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Research article
Discarding duplicate ditags in LongSAGE analysis may introduce significant error Jeppe Emmersen, Anna M Heidenblut, Annabeth Høgh, Stephan A Hahn, Karen G Welinder, Kåre L Nielsen BMC Bioinformatics 2007, 8:92 (14 March 2007) |
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Research article
Modeling human cancer-related regulatory modules by GA-RNN hybrid algorithms Jung-Hsien Chiang, Shih-Yi Chao BMC Bioinformatics 2007, 8:91 (14 March 2007) |
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Research article
Caroline Truntzer, Catherine Mercier, Jacques Estève, Christian Gautier, Pascal Roy BMC Bioinformatics 2007, 8:90 (13 March 2007) |
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Research article
Fast computation of distance estimators Isaac Elias, Jens Lagergren BMC Bioinformatics 2007, 8:89 (13 March 2007) |
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Research article
Regulation of metabolic networks by small molecule metabolites Alex Gutteridge, Minoru Kanehisa, Susumu Goto BMC Bioinformatics 2007, 8:88 (13 March 2007) |
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Database
GeneBins: a database for classifying gene expression data, with application to plant genome arrays Nicolas Goffard, Georg Weiller BMC Bioinformatics 2007, 8:87 (12 March 2007) |
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Research article
Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint Russell L Marsden, Tony A Lewis, Christine A Orengo BMC Bioinformatics 2007, 8:86 (9 March 2007) |
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Methodology article
Model based analysis of real-time PCR data from DNA binding dye protocols Mariano J Alvarez, Guillermo J Vila-Ortiz, Mariano C Salibe, Osvaldo L Podhajcer, Fernando J Pitossi BMC Bioinformatics 2007, 8:85 (9 March 2007) |
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Methodology article
Statistical tests to compare motif count exceptionalities Stéphane Robin, Sophie Schbath, Vincent Vandewalle BMC Bioinformatics 2007, 8:84 (8 March 2007) |
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Methodology article
Orthology prediction at scalable resolution by phylogenetic tree analysis René TJM van der Heijden, Berend Snel, Vera van Noort, Martijn A Huynen BMC Bioinformatics 2007, 8:83 (8 March 2007) |
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Software
Amit U Sinha, Jaroslaw Meller BMC Bioinformatics 2007, 8:82 (8 March 2007) |
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Software
TAMEE: data management and analysis for tissue microarrays Gerhard G Thallinger, Kerstin Baumgartner, Martin Pirklbauer, Martina Uray, Elke Pauritsch, Gabor Mehes, Charles R Buck, Kurt Zatloukal, Zlatko Trajanoski BMC Bioinformatics 2007, 8:81 (7 March 2007) |
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Methodology article
Bayesian meta-analysis models for microarray data: a comparative study Erin M Conlon, Joon J Song, Anna Liu BMC Bioinformatics 2007, 8:80 (7 March 2007) Of two recent ways to combine the results of microarrays using Bayesian statistics the simpler approach, which ignores variability across studies, actually performs better.
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Software
SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML) Nicolas Rodriguez, Marco Donizelli, Nicolas Le Novère BMC Bioinformatics 2007, 8:79 (6 March 2007) |
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Methodology article
Predicting mostly disordered proteins by using structure-unknown protein data Kana Shimizu, Yoichi Muraoka, Shuichi Hirose, Kentaro Tomii, Tamotsu Noguchi BMC Bioinformatics 2007, 8:78 (6 March 2007) |
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Research article
Comparison of protein structures by growing neighborhood alignments Sourangshu Bhattacharya, Chiranjib Bhattacharyya, Nagasuma R Chandra BMC Bioinformatics 2007, 8:77 (6 March 2007) |
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Research article
An efficient grid layout algorithm for biological networks utilizing various biological attributes Kaname Kojima, Masao Nagasaki, Euna Jeong, Mitsuru Kato, Satoru Miyano BMC Bioinformatics 2007, 8:76 (6 March 2007) |
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Database
Ari B Kahn, Michael C Ryan, Hongfang Liu, Barry R Zeeberg, D Curtis Jamison, John N Weinstein BMC Bioinformatics 2007, 8:75 (5 March 2007) |
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Methodology article
Gene selection with multiple ordering criteria James J Chen, Chen-An Tsai, ShengLi Tzeng, Chun-Houh Chen BMC Bioinformatics 2007, 8:74 (5 March 2007) |
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Research article
Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases Karolina L Tkaczuk, Stanislaw Dunin-Horkawicz, Elzbieta Purta, Janusz M Bujnicki BMC Bioinformatics 2007, 8:73 (5 March 2007) |
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Methodology article
Visualization of three-way comparisons of omics data Richard Baran, Martin Robert, Makoto Suematsu, Tomoyoshi Soga, Masaru Tomita BMC Bioinformatics 2007, 8:72 (5 March 2007) |
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Research article
A comparative study of S/MAR prediction tools Kenneth Evans, Sascha Ott, Annika Hansen, Georgy Koentges, Lorenz Wernisch BMC Bioinformatics 2007, 8:71 (2 March 2007) |
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Methodology article
John Moriarty, Julian R Marchesi, Anthony Metcalfe BMC Bioinformatics 2007, 8:70 (2 March 2007) |
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Research article
Inference of miRNA targets using evolutionary conservation and pathway analysis Dimos Gaidatzis, Erik van Nimwegen, Jean Hausser, Mihaela Zavolan BMC Bioinformatics 2007, 8:69 (1 March 2007) |
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Research article
False occurrences of functional motifs in protein sequences highlight evolutionary constraints Allegra Via, Pier Gherardini, Enrico Ferraro, Gabriele Ausiello, Gianpaolo Scalia Tomba, Manuela Helmer-Citterich BMC Bioinformatics 2007, 8:68 (1 March 2007) |
