Articles
Volume 8 (2007) - February 2007
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Methodology article
Kernel-imbedded Gaussian processes for disease classification using microarray gene expression data Xin Zhao, Leo Cheung BMC Bioinformatics 2007, 8:67 (28 February 2007) |
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Methodology article
Chun-Nan Hsu, Jin-Mei Lai, Chia-Hung Liu, Huei-Hun Tseng, Chih-Yun Lin, Kuan-Ting Lin, Hsu-Hua Yeh, Ting-Yi Sung, Wen-Lian Hsu, Li-Jen Su, Sheng-An Lee, Chang-Han Chen, Gen-Cher Lee, DT Lee, Yow-Ling Shiue, Chang-Wei Yeh, Chao-Hui Chang, Cheng-Yan Kao, Chi-Ying F Huang BMC Bioinformatics 2007, 8:66 (27 February 2007) |
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Software
AGGRESCAN: a server for the prediction and evaluation of "hot spots" of aggregation in polypeptides Oscar Conchillo-Solé, Natalia S de Groot, Francesc X Avilés, Josep Vendrell, Xavier Daura, Salvador Ventura BMC Bioinformatics 2007, 8:65 (27 February 2007) |
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Software
Minimus: a fast, lightweight genome assembler Daniel D Sommer, Arthur L Delcher, Steven L Salzberg, Mihai Pop BMC Bioinformatics 2007, 8:64 (26 February 2007) Minimus is a stripped-down genome assembler that is faster and more flexible for smaller genomes and assembly tasks than are existing genomics tools
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Software
Arthur Shih, DT Lee, Chin-Lin Peng, Yu-Wei Wu BMC Bioinformatics 2007, 8:63 (24 February 2007) |
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Methodology article
Blast sampling for structural and functional analyses Anne Friedrich, Raymond Ripp, Nicolas Garnier, Emmanuel Bettler, Gilbert Deléage, Olivier Poch, Luc Moulinier BMC Bioinformatics 2007, 8:62 (23 February 2007) |
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Research article
Factor analysis for gene regulatory networks and transcription factor activity profiles Iosifina Pournara, Lorenz Wernisch BMC Bioinformatics 2007, 8:61 (23 February 2007) |
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Methodology article
Supervised group Lasso with applications to microarray data analysis Shuangge Ma, Xiao Song, Jian Huang BMC Bioinformatics 2007, 8:60 (22 February 2007) |
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Software
Bioclipse: an open source workbench for chemo- and bioinformatics Ola Spjuth, Tobias Helmus, Egon L Willighagen, Stefan Kuhn, Martin Eklund, Johannes Wagener, Peter Murray-Rust, Christoph Steinbeck, Jarl ES Wikberg BMC Bioinformatics 2007, 8:59 (22 February 2007) |
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Software
Sequence similarity is more relevant than species specificity in probabilistic backtranslation Alfredo Ferro, Rosalba Giugno, Giuseppe Pigola, Alfredo Pulvirenti, Cinzia Di Pietro, Michele Purrello, Marco Ragusa BMC Bioinformatics 2007, 8:58 (21 February 2007) |
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Commentary
Mikel Aranguren, Sean Bechhofer, Phillip Lord, Ulrike Sattler, Robert Stevens BMC Bioinformatics 2007, 8:57 (20 February 2007) |
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Research article
Recognition of interferon-inducible sites, promoters, and enhancers Elena A Ananko, Yury V Kondrakhin, Tatiana I Merkulova, Nikolay A Kolchanov BMC Bioinformatics 2007, 8:56 (19 February 2007) |
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Research article
Najib Naamane, Jacques van Helden, Decio L Eizirik BMC Bioinformatics 2007, 8:55 (15 February 2007) |
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Software
BIRCH: A user-oriented, locally-customizable, bioinformatics system Brian Fristensky BMC Bioinformatics 2007, 8:54 (9 February 2007) |
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Software
Ji He, Xinbin Dai, Xuechun Zhao BMC Bioinformatics 2007, 8:53 (9 February 2007) |
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Software
PASSIM – an open source software system for managing information in biomedical studies Juris Viksna, Edgars Celms, Martins Opmanis, Karlis Podnieks, Peteris Rucevskis, Andris Zarins, Amy Barrett, Sudeshna Neogi, Maria Krestyaninova, Mark I McCarthy, Alvis Brazma, Ugis Sarkans BMC Bioinformatics 2007, 8:52 (9 February 2007) |
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Methodology article
msmsEval: tandem mass spectral quality assignment for high-throughput proteomics Jason WH Wong, Matthew J Sullivan, Hugh M Cartwright, Gerard Cagney BMC Bioinformatics 2007, 8:51 (9 February 2007) |
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Research article
BioInfer: a corpus for information extraction in the biomedical domain Sampo Pyysalo, Filip Ginter, Juho Heimonen, Jari Björne, Jorma Boberg, Jouni Järvinen, Tapio Salakoski BMC Bioinformatics 2007, 8:50 (9 February 2007) |
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Methodology article
MetaQTL: a package of new computational methods for the meta-analysis of QTL mapping experiments Jean-Baptiste Veyrieras, Bruno Goffinet, Alain Charcosset BMC Bioinformatics 2007, 8:49 (8 February 2007) |
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Correspondence
Improved precision and accuracy for microarrays using updated probe set definitions Rickard Sandberg, Ola Larsson BMC Bioinformatics 2007, 8:48 (8 February 2007) |
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Methodology article
Yuko Makita, Michiel JL de Hoon, Antoine Danchin BMC Bioinformatics 2007, 8:47 (8 February 2007) |
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Research article
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences Giulio Pavesi, Federico Zambelli, Graziano Pesole BMC Bioinformatics 2007, 8:46 (7 February 2007) |
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Research article
Jenny Gu, Philip E Bourne BMC Bioinformatics 2007, 8:45 (7 February 2007) |
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Methodology article
Francisco R Pinto, João A Carriço, Mário Ramirez, Jonas S Almeida BMC Bioinformatics 2007, 8:44 (7 February 2007) |
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Research article
Predictive modeling of plant messenger RNA polyadenylation sites Guoli Ji, Jianti Zheng, Yingjia Shen, Xiaohui Wu, Ronghan Jiang, Yun Lin, Johnny C Loke, Kimberly M Davis, Greg J Reese, Qingshun Li BMC Bioinformatics 2007, 8:43 (7 February 2007) |
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Database
PlnTFDB: an integrative plant transcription factor database Diego Riaño-Pachón, Slobodan Ruzicic, Ingo Dreyer, Bernd Mueller-Roeber BMC Bioinformatics 2007, 8:42 (7 February 2007) |
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Software
FUNC: a package for detecting significant associations between gene sets and ontological annotations Kay Prüfer, Bjoern Muetzel, Hong-Hai Do, Gunter Weiss, Philipp Khaitovich, Erhard Rahm, Svante Pääbo, Michael Lachmann, Wolfgang Enard BMC Bioinformatics 2007, 8:41 (6 February 2007) |
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Software
NeuroTerrain – a client-server system for browsing 3D biomedical image data sets Carl Gustafson, William J Bug, Jonathan Nissanov BMC Bioinformatics 2007, 8:40 (5 February 2007) |
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Research article
Predicting zinc binding at the proteome level Andrea Passerini, Claudia Andreini, Sauro Menchetti, Antonio Rosato, Paolo Frasconi BMC Bioinformatics 2007, 8:39 (5 February 2007) |
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Research article
Zailong Wang, Pearlly Yan, Dustin Potter, Charis Eng, Tim Huang, Shili Lin BMC Bioinformatics 2007, 8:38 (1 February 2007) |
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Methodology article
Boolean networks using the chi-square test for inferring large-scale gene regulatory networks Haseong Kim, Jae K Lee, Taesung Park BMC Bioinformatics 2007, 8:37 (1 February 2007) |
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Software
GEVALT: An integrated software tool for genotype analysis Ofir Davidovich, Gad Kimmel, Ron Shamir BMC Bioinformatics 2007, 8:36 (1 February 2007) |
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Research article
Classification of microarray data using gene networks Franck Rapaport, Andrei Zinovyev, Marie Dutreix, Emmanuel Barillot, Jean-Philippe Vert BMC Bioinformatics 2007, 8:35 (1 February 2007) |
