Articles
Volume 8 (2007) - August 2007
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Research article
Xiaohua Hu, Fang-Xiang Wu BMC Bioinformatics 2007, 8:324 (31 August 2007) |
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Research article
Xinning Jiang, Xiaogang Jiang, Guanghui Han, Mingliang Ye, Hanfa Zou BMC Bioinformatics 2007, 8:323 (31 August 2007) |
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Research article
Statistical validation of megavariate effects in ASCA Daniel J Vis, Johan A Westerhuis, Age K Smilde, Jan van der Greef BMC Bioinformatics 2007, 8:322 (30 August 2007) |
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Research article
Automatic generation of 3D motifs for classification of protein binding sites Jean-Christophe Nebel, Pawel Herzyk, David R Gilbert BMC Bioinformatics 2007, 8:321 (30 August 2007) |
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Software
Kathrin Klee, Rebecca Ernst, Manuel Spannagl, Klaus FX Mayer BMC Bioinformatics 2007, 8:320 (30 August 2007) |
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Database
antiCODE: a natural sense-antisense transcripts database Yifei Yin, Yi Zhao, Jie Wang, Changning Liu, Shuguang Chen, Runsheng Chen, Haitao Zhao BMC Bioinformatics 2007, 8:319 (30 August 2007) |
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Software
Alex V Kochetov, Andrey Palyanov, Igor I Titov, Dmitry Grigorovich, Akinori Sarai, Nikolay A Kolchanov BMC Bioinformatics 2007, 8:318 (30 August 2007) |
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Methodology article
Peter Larsen, Eyad Almasri, Guanrao Chen, Yang Dai BMC Bioinformatics 2007, 8:317 (29 August 2007) |
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Software
Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D Aleksey Porollo, Jaroslaw Meller BMC Bioinformatics 2007, 8:316 (29 August 2007) |
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Research article
The topology of metabolic isotope labeling networks Michael Weitzel, Wolfgang Wiechert, Katharina Nöh BMC Bioinformatics 2007, 8:315 (29 August 2007) |
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Methodology article
A comprehensive system for evaluation of remote sequence similarity detection Yuan Qi, Ruslan I Sadreyev, Yong Wang, Bong-Hyun Kim, Nick V Grishin BMC Bioinformatics 2007, 8:314 (28 August 2007) |
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Software
Integrated network reconstruction, visualization and analysis using YANAsquare Roland Schwarz, Chunguang Liang, Christoph Kaleta, Mark Kühnel, Eik Hoffmann, Sergei Kuznetsov, Michael Hecker, Gareth Griffiths, Stefan Schuster, Thomas Dandekar BMC Bioinformatics 2007, 8:313 (28 August 2007) |
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Methodology article
MaxAlign: maximizing usable data in an alignment Rodrigo Gouveia-Oliveira, Peter W Sackett, Anders G Pedersen BMC Bioinformatics 2007, 8:312 (28 August 2007) |
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Research article
Modular co-evolution of metabolic networks Jing Zhao, Guo-Hui Ding, Lin Tao, Hong Yu, Zhong-Hao Yu, Jian-Hua Luo, Zhi-Wei Cao, Yi-Xue Li BMC Bioinformatics 2007, 8:311 (27 August 2007) |
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Research article
Luis A Diago, Persy Morell, Longendri Aguilera, Ernesto Moreno BMC Bioinformatics 2007, 8:310 (25 August 2007) |
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Software
PARE: A tool for comparing protein abundance and mRNA expression data Eric Z Yu, Anne Burba, Mark Gerstein BMC Bioinformatics 2007, 8:309 (24 August 2007) |
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Research article
Analysis of the role of retrotransposition in gene evolution in vertebrates Zhan Yu, David Morais, Mahine Ivanga, Paul M Harrison BMC Bioinformatics 2007, 8:308 (24 August 2007) |
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Methodology article
Protein structural similarity search by Ramachandran codes Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang, Ping-Chiang Lyu BMC Bioinformatics 2007, 8:307 (23 August 2007) |
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Methodology article
Convergent algorithms for protein structural alignment Leandro Martínez, Roberto Andreani, José Martínez BMC Bioinformatics 2007, 8:306 (22 August 2007) |
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Research article
Automated smoother for the numerical decoupling of dynamics models Marco Vilela, Carlos CH Borges, Susana Vinga, Ana Vasconcelos, Helena Santos, Eberhard O Voit, Jonas S Almeida BMC Bioinformatics 2007, 8:305 (21 August 2007) |
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Research article
Evaluation of 3D-Jury on CASP7 models László Kaján, Leszek Rychlewski BMC Bioinformatics 2007, 8:304 (21 August 2007) |
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Research article
Correlation between structure and temperature in prokaryotic metabolic networks Kazuhiro Takemoto, Jose C Nacher, Tatsuya Akutsu BMC Bioinformatics 2007, 8:303 (21 August 2007) |
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Methodology article
Prediction of the burial status of transmembrane residues of helical membrane proteins Yungki Park, Sikander Hayat, Volkhard Helms BMC Bioinformatics 2007, 8:302 (20 August 2007) |
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Methodology article
Genome bioinformatic analysis of nonsynonymous SNPs David F Burke, Catherine L Worth, Eva-Maria Priego, Tammy Cheng, Luc J Smink, John A Todd, Tom L Blundell BMC Bioinformatics 2007, 8:301 (20 August 2007) |
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Research article
Efficacy of different protein descriptors in predicting protein functional families Serene AK Ong, Hong Lin, Yu Chen, Ze Li, Zhiwei Cao BMC Bioinformatics 2007, 8:300 (17 August 2007) |
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Research article
Feng Luo, Yunfeng Yang, Jianxin Zhong, Haichun Gao, Latifur Khan, Dorothea K Thompson, Jizhong Zhou BMC Bioinformatics 2007, 8:299 (14 August 2007) |
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Database
Predicting active site residue annotations in the Pfam database Jaina Mistry, Alex Bateman, Robert D Finn BMC Bioinformatics 2007, 8:298 (9 August 2007) |
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Research article
Caroline C Friedel, Ralf Zimmer BMC Bioinformatics 2007, 8:297 (9 August 2007) |
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Software
Annotation and query of tissue microarray data using the NCI Thesaurus Nigam H Shah, Daniel L Rubin, Inigo Espinosa, Kelli Montgomery, Mark A Musen BMC Bioinformatics 2007, 8:296 (8 August 2007) |
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Research article
Marija Cvijović, Daniel Dalevi, Elizabeth Bilsland, Graham JL Kemp, Per Sunnerhagen BMC Bioinformatics 2007, 8:295 (8 August 2007) |
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Research article
Quantitative sequence-function relationships in proteins based on gene ontology Vineet Sangar, Daniel J Blankenberg, Naomi Altman, Arthur M Lesk BMC Bioinformatics 2007, 8:294 (8 August 2007) |
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Methodology article
Automatic reconstruction of a bacterial regulatory network using Natural Language Processing Carlos Rodríguez-Penagos, Heladia Salgado, Irma Martínez-Flores, Julio Collado-Vides BMC Bioinformatics 2007, 8:293 (7 August 2007) |
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Software
rMotifGen: random motif generator for DNA and protein sequences Eric C Rouchka, C Timothy Hardin BMC Bioinformatics 2007, 8:292 (7 August 2007) |
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Research article
Portraits of breast cancer progression Gul S Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot BMC Bioinformatics 2007, 8:291 (6 August 2007) |
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Methodology article
Computation of significance scores of unweighted Gene Set Enrichment Analyses Andreas Keller, Christina Backes, Hans-Peter Lenhof BMC Bioinformatics 2007, 8:290 (6 August 2007) |
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Methodology article
Brian J Holden, John W Pinney, Simon C Lovell, Grigoris D Amoutzias, David L Robertson BMC Bioinformatics 2007, 8:289 (6 August 2007) |
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Software
TomoJ: tomography software for three-dimensional reconstruction in transmission electron microscopy Cédric MessaoudiI, Thomas Boudier, Carlos Sorzano, Sergio Marco BMC Bioinformatics 2007, 8:288 (6 August 2007) |
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Database
OReFiL: an online resource finder for life sciences Yasunori Yamamoto, Toshihisa Takagi BMC Bioinformatics 2007, 8:287 (6 August 2007) |
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Software
CLUSS: Clustering of protein sequences based on a new similarity measure Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski, Alain Fleury BMC Bioinformatics 2007, 8:286 (4 August 2007) |
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Methodology article
miRAS: a data processing system for miRNA expression profiling study Feng Tian, Huayue Zhang, Xinyu Zhang, Chi Song, Yongjing Xia, Yiqing Wu, Xiangjun Liu BMC Bioinformatics 2007, 8:285 (4 August 2007) |
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Correspondence
Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach Carson Andorf, Drena Dobbs, Vasant Honavar BMC Bioinformatics 2007, 8:284 (3 August 2007) |
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Research article
Xiangdong Liu, Walter J Jessen, Siva Sivaganesan, Bruce J Aronow, Mario Medvedovic BMC Bioinformatics 2007, 8:283 (3 August 2007) |
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Methodology article
Scott D Zuyderduyn BMC Bioinformatics 2007, 8:282 (2 August 2007) |
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Software
Naoto Tanaka, Masataka Uchino, Satoru Miyazaki, Hideaki Sugawara BMC Bioinformatics 2007, 8:281 (2 August 2007) |
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Database
PepBank - a database of peptides based on sequence text mining and public peptide data sources Timur Shtatland, Daniel Guettler, Misha Kossodo, Misha Pivovarov, Ralph Weissleder BMC Bioinformatics 2007, 8:280 (1 August 2007) |
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Methodology article
Combination of scoring schemes for protein docking Philipp Heuser, Dietmar Schomburg BMC Bioinformatics 2007, 8:279 (1 August 2007) |
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Methodology article
Erin P Price, John Inman-Bamber, Venugopal Thiruvenkataswamy, Flavia Huygens, Philip M Giffard BMC Bioinformatics 2007, 8:278 (1 August 2007) |
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Methodology article
Haplotype-based score test for linkage in nuclear families Chung Mo Nam, Dae Ryong Kang, Jinheum Kim BMC Bioinformatics 2007, 8:277 (1 August 2007) |
