Articles
Volume 6 (2005) - October 2005
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Methodology article
Using hexamers to predict cis-regulatory motifs in Drosophila Bob Y Chan, Dennis Kibler BMC Bioinformatics 2005, 6:262 (27 October 2005) |
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Methodology article
A method of precise mRNA/DNA homology-based gene structure prediction Alexander Churbanov, Mark Pauley, Daniel Quest, Hesham Ali BMC Bioinformatics 2005, 6:261 (21 October 2005) The mRNA/DNA homology-based gene predictor, GIGOgene, beats rival algorithms to provide higher quality gene structural predictions, including genes that contain micro-exons or non-canonical splice sites.
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Software
SpectralNET – an application for spectral graph analysis and visualization Joshua J Forman, Paul A Clemons, Stuart L Schreiber, Stephen J Haggarty BMC Bioinformatics 2005, 6:260 (19 October 2005) |
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Research article
Markey C McNutt, Ron Tongbai, Wenwu Cui, Irene Collins, Wendy J Freebern, Idalia Montano, Cynthia M Haggerty, GVR Chandramouli, Kevin Gardner BMC Bioinformatics 2005, 6:259 (18 October 2005) |
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Methodology article
Li-Hsieh Lin, Hsiao-Ching Lee, Wen-Hsiung Li, Bor-Sen Chen BMC Bioinformatics 2005, 6:258 (18 October 2005) |
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Research article
Statistical distributions of optimal global alignment scores of random protein sequences Hongxia Pang, Jiaowei Tang, Su-Shing Chen, Shiheng Tao BMC Bioinformatics 2005, 6:257 (15 October 2005) |
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Research article
Evaluating eukaryotic secreted protein prediction Eric W Klee, Lynda BM Ellis BMC Bioinformatics 2005, 6:256 (14 October 2005) |
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Research article
François Ferron, Cécile Bussetta, Hélène Dutartre, Bruno Canard BMC Bioinformatics 2005, 6:255 (14 October 2005) |
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Research article
Prediction of β-barrel membrane proteins by searching for restricted domains Oliver Mirus, Enrico Schleiff BMC Bioinformatics 2005, 6:254 (14 October 2005) |
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Research article
Tomas Ohlson, Arne Elofsson BMC Bioinformatics 2005, 6:253 (14 October 2005) |
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Software
CoaSim: A flexible environment for simulating genetic data under coalescent models Thomas Mailund, Mikkel H Schierup, Christian NS Pedersen, Peter JM Mechlenborg, Jesper N Madsen, Leif Schauser BMC Bioinformatics 2005, 6:252 (14 October 2005) The CoaSim application generates coalescent simulations of various types of genetic data, useful for evaluation of association mapping, marker choice and parametric bootstrapping, and includes a cut-down graphical user interface for educational and exploratory use.
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Research article
Differentiation of regions with atypical oligonucleotide composition in bacterial genomes Oleg N Reva, Burkhard Tümmler BMC Bioinformatics 2005, 6:251 (14 October 2005) |
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Methodology article
MASQOT: a method for cDNA microarray spot quality control Max Bylesjö, Daniel Eriksson, Andreas Sjödin, Michael Sjöström, Stefan Jansson, Henrik Antti, Johan Trygg BMC Bioinformatics 2005, 6:250 (13 October 2005) |
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Database
SPdb – a signal peptide database Khar Choo, Tin Tan, Shoba Ranganathan BMC Bioinformatics 2005, 6:249 (13 October 2005) |
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Research article
Zheng Yuan BMC Bioinformatics 2005, 6:248 (13 October 2005) |
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Software
Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis François Enault, Karsten Suhre, Jean-Michel Claverie BMC Bioinformatics 2005, 6:247 (12 October 2005) Gene Function Predictor, included in the updated Phydbac tool compares well with other genomic context servers in proposing putative associations between Escherichia coli K-12 proteins, demonstrating an accuracy of over 70% in the linkage of these predictions to gene ontology terms.
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Software
Stéphanie Monnier, David G Cox, Tim Albion, Federico Canzian BMC Bioinformatics 2005, 6:246 (12 October 2005) |
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Research article
Extension of Lander-Waterman theory for sequencing filtered DNA libraries Michael C Wendl, W Brad Barbazuk BMC Bioinformatics 2005, 6:245 (10 October 2005) |
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Software
Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole BMC Bioinformatics 2005, 6:244 (5 October 2005) |
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Research article
Phylogenetic detection of conserved gene clusters in microbial genomes Yu Zheng, Brian P Anton, Richard J Roberts, Simon Kasif BMC Bioinformatics 2005, 6:243 (3 October 2005) |
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Methodology article
Qicheng Ma, Gung-Wei Chirn, Richard Cai, Joseph D Szustakowski, NR Nirmala BMC Bioinformatics 2005, 6:242 (3 October 2005) |
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Research article
A comparison of RNA folding measures Eva Freyhult, Paul P Gardner, Vincent Moulton BMC Bioinformatics 2005, 6:241 (3 October 2005) |
