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Editor-in-Chief
Melissa Norton, MD Biology Editor
Penelope Webb, PhD In-house Editor
Tim Sands PhD
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 BMC Bioinformatics, Volume 10
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Research article
 
Prediction of protein binding sites in protein structures using hidden Markov support vector machine
Bin Liu, Xiaolong Wang, Lei Lin, Buzhou Tang, Qiwen Dong, Xuan Wang
BMC Bioinformatics 2009, 10:381 (20November2009)
[Abstract] [Provisional PDF]
Methodology article
An experimental loop design for the detection of constitutional chromosomal aberrations by array CGH
Joke Allemeersch, Steven Van Vooren, Femke Hannes, Bart De Moor, Joris Robert Vermeesch, Yves Moreau
BMC Bioinformatics 2009, 10:380 (19November2009)
[Abstract] [Provisional PDF]
Software
SitesIdentify: a protein functional site prediction tool
Tracey Bray, Pedro Chan, Salim Bougouffa, Richard Greaves, Andrew J Doig, Jim Warwicker
BMC Bioinformatics 2009, 10:379 (18November2009)
[Abstract] [Provisional PDF]
Methodology article
Nonlinear preprocessing method for detecting peaks from gas chromatograms
Byonghyo Shim, Hyeyoung Min, Sungroh Yoon
BMC Bioinformatics 2009, 10:378 (18November2009)
[Abstract] [Provisional PDF]
Methodology article
The ontology of biological sequences
Robert Hoehndorf, Janet Kelso, Heinrich Herre
BMC Bioinformatics 2009, 10:377 (18November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Methodology article
Algorithms for effective querying of compound graph-based pathway databases
Ugur Dogrusoz, Ahmet Cetintas, Emek Demir, Ozgun Babur
BMC Bioinformatics 2009, 10:376 (16November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
A generic algorithm for layout of biological networks
Falk Schreiber, Tim Dwyer, Kim Marriott, Michael Wybrow
BMC Bioinformatics 2009, 10:375 (12November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Linguistic feature analysis for protein interaction extraction
Timur Fayruzov, Martine De Cock, Chris Cornelis, Veronique Hoste
BMC Bioinformatics 2009, 10:374 (12November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Methodology article
A theoretical approach to spot active regions in antimicrobial proteins
Marc Torrent, Vict ria M Nogu s, Ester Boix
BMC Bioinformatics 2009, 10:373 (11November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Methodology article
Illumina WG-6 BeadChip strips should be normalized separately
Wei Shi, Ashish Banerjee, Matthew E Ritchie, Steve Gerondakis, Gordon K Smyth
BMC Bioinformatics 2009, 10:372 (11November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Methodology article
An empirical Bayesian approach for model-based inference of cellular signaling networks
David J Klinke II
BMC Bioinformatics 2009, 10:371 (9November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Elucidation of functional consequences of signalling pathway interactions
Adaoha EC Ihekwaba, Phuong T Nguyen, Corrado Priami
BMC Bioinformatics 2009, 10:370 (6November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
RNA folding on the 3D triangular lattice
Joel Gillespie, Martin Mayne, Minghui Jiang
BMC Bioinformatics 2009, 10:369 (5November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Database
A biosegmentation benchmark for evaluation of bioimage analysis methods
Elisa Drelie Gelasca, Boguslaw Obara, Dmitry Fedorov, Kristian Kvilekval, BS Manjunath
BMC Bioinformatics 2009, 10:368 (1November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Database
GLIDERS - A web-based search engine for genome-wide linkage disequilibrium between HapMap SNPs
Robert Lawrence, Aaron G Day-Williams, Richard Mott, John Broxholme, Lon R Cardon, Eleftheria Zeggini
BMC Bioinformatics 2009, 10:367 (31October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Methodology article
(PS)2-v2: template-based protein structure prediction server
Chih-Chieh Chen, Jenn-Kang Hwang, Jinn-Moon Yang
BMC Bioinformatics 2009, 10:366 (31October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods
Stefano Lise, Cedric Archambeau, Massimiliano Pontil, David T Jones
BMC Bioinformatics 2009, 10:365 (30October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Software
multiplierz: an extensible API based desktop environment for proteomics data analysis
Jignesh R Parikh, Manor Askenazi, Scott B Ficarro, Tanya Cashorali, James T Webber, Nathaniel C Blank, Yi Zhang, Jarrod A Marto
BMC Bioinformatics 2009, 10:364 (29October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Software
A novel R-package graphic user interface for the analysis of metabonomic profiles
Jose L Izquierdo-Garc a, Ignacio Rodrguez, Angelos Kyriazis, Palmira Villa, Pilar Barreiro, Manuel Desco, Jes s Ruiz-Cabello
BMC Bioinformatics 2009, 10:363 (29October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Software
BARCRAWL and BARTAB: software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing
Daniel N Frank
BMC Bioinformatics 2009, 10:362 (29October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
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