| | |  | Archive |
|
|
| | | | | | | |
Editor-in-Chief
Melissa Norton, MD Biology Editor
Penelope Webb, PhD In-house Editor
Maria Kowalczuk
|
 BMC Bioinformatics, Volume 9
|
Software
 
Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm
Jeremy D DeBarry, Renyi Liu, Jeffrey L Bennetzen
BMC Bioinformatics 2008, 9:235 (13May2008)
[Abstract] [Provisional PDF]
Research article
Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
Andrew J Bordner, Andrey A Gorin
BMC Bioinformatics 2008, 9:234 (12May2008)
[Abstract] [Provisional PDF]
Software
Triad pattern algorithm for predicting strong promoter candidates in bacterial genomes
Michael Dekhtyar, Amelie Morin, Vehary Sakanyan
BMC Bioinformatics 2008, 9:233 (9May2008)
[Abstract] [Provisional PDF]
Research article
Bioinformatic analyses of mammalian 5'-UTR sequence properties of mRNAs predicts alternative translation initiation sites
Jill L Wegrzyn, Thomas M Drudge, Faramarz Valafar, Vivian Hook
BMC Bioinformatics 2008, 9:232 (8May2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Software
Automating dChip: toward reproducible sharing of microarray data analysis
Cheng Li
BMC Bioinformatics 2008, 9:231 (8May2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Software
CPSP-tools - exact and complete algorithms for high-throughput 3D lattice protein studies
Martin Mann, Sebastian Will, Rolf Backofen
BMC Bioinformatics 2008, 9:230 (7May2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Methodology article
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
Claudia Chica, Alberto Labarga, Cathryn M Gould, Rodrigo Lopez, Toby J Gibson
BMC Bioinformatics 2008, 9:229 (6May2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Methodology article
Inferring the role of transcription factors in regulatory networks
Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel
BMC Bioinformatics 2008, 9:228 (6May2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Methodology article
The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks
Anatolij P. Potapov, Bjorn Goemann, Edgar Wingender
BMC Bioinformatics 2008, 9:227 (2May2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Methodology article
SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences
Lukasz Kurgan, Krzysztof Cios, Ke Chen
BMC Bioinformatics 2008, 9:226 (1May2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Methodology article
A copula method for modeling directional dependence of genes
Jong-Min Kim, Yoon-Sung Jung, Engin A Sungur, Kap-Hoon Han, Changyi Park, Insuk Sohn
BMC Bioinformatics 2008, 9:225 (1May2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Methodology article
Implementing EM and Viterbi algorithms for Hidden Markov Model in linear memory
Alexander Churbanov, Stephen Winters-Hilt
BMC Bioinformatics 2008, 9:224 (30April2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Software
GENOMEPOP: A program to simulate genomes in populations
Antonio Carvajal-Rodriguez
BMC Bioinformatics 2008, 9:223 (30April2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Methodology article
An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions
Alexander Churkin, Danny Barash
BMC Bioinformatics 2008, 9:222 (29April2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Methodology article
Highly accurate sigmoidal fitting of real-time PCR data by introducing a parameter for asymmetry
Andrej-Nikolai Spiess, Caroline Feig, Christian Ritz
BMC Bioinformatics 2008, 9:221 (29April2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Studying the functional conservation of cis-regulatory modules and their transcriptional output
Denis C Bauer, Timothy L Bailey
BMC Bioinformatics 2008, 9:220 (29April2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Methodology article
ConStruct: improved construction of RNA consensus structures
Andreas Wilm, Kornelia Linnenbrink, Gerhard Steger
BMC Bioinformatics 2008, 9:219 (28April2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Software
An efficient visualization tool for the analysis of protein mutation matrices
Maria Pamela C David, Carlo M Lapid, Vincent Ricardo M Daria
BMC Bioinformatics 2008, 9:218 (28April2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Methodology article
Gene prediction in metagenomic fragments: a large scale machine learning approach
Katharina J Hoff, Maike Tech, Thomas Lingner, Rolf Daniel, Burkhard Morgenstern, Peter Meinicke
BMC Bioinformatics 2008, 9:217 (28April2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Normalization for triple-target microarray experiments
Marie-Laure Martin-Magniette, Julie Aubert, Avner Bar-Hen, Samira Elftieh, Frederic Magniette, Jean-Pierre Renou, Jean-Jacques Daudin
BMC Bioinformatics 2008, 9:216 (28April2008)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
|
| 
BMC Bioinformatics Volumes |
| | |
 |
