Supplements
Editor-in-Chief Melissa Norton, MD
Biology Editor Penelope Webb, PhD
In-house Editor Tim Sands PhD
BMC Bioinformatics publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 7 Suppl 5
APBioNet
Fifth International Conference on Bioinformatics (InCoB2006)
Proceedings
from International Conference in Bioinformatics
InCoB2006
New Delhi, India. 18
20 December 2006
Edited by Shoba Ranganathan, Martti Tammi, Michael Gribskov, Tin Wee Tan
Introduction
Establishing bioinformatics research in the Asia Pacific Shoba Ranganathan, Martti Tammi, Michael Gribskov, Tin Wee Tan BMC Bioinformatics 2006, 7 (Suppl 5):S1 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome Alan Christoffels, Richard Bartfai, Hamsa Srinivasan, Hans Komen, Laszlo Orban BMC Bioinformatics 2006, 7 (Suppl 5):S2 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Evaluation and comparison of mammalian subcellular localization prediction methods Josefine Sprenger, J Lynn Fink, Rohan D Teasdale BMC Bioinformatics 2006, 7 (Suppl 5):S3 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus Asif M Khan, AT Heiny, Kenneth X Lee, KN Srinivasan, Tin Wee Tan, J Thomas August, Vladimir Brusic BMC Bioinformatics 2006, 7 (Suppl 5):S4 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Projections for fast protein structure retrieval Sourangshu Bhattacharya, Chiranjib Bhattacharyya, Nagasuma R Chandra BMC Bioinformatics 2006, 7 (Suppl 5):S5 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Improving the performance of DomainDiscovery of protein domain boundary assignment using inter-domain linker index Abdur R Sikder, Albert Y Zomaya BMC Bioinformatics 2006, 7 (Suppl 5):S6 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6- associated Pemphigus vulgaris Joo Chuan Tong, Tin Wee Tan, Animesh A Sinha, Shoba Ranganathan BMC Bioinformatics 2006, 7 (Suppl 5):S7 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes Manisha Brahmachary, Christian Sch BMC Bioinformatics 2006, 7 (Suppl 5):S8 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria Sarita Ranjan, Ranjit Kumar Gundu, Akash Ranjan BMC Bioinformatics 2006, 7 (Suppl 5):S9 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Review
Trends in life science grid: from computing grid to knowledge grid Akihiko Konagaya BMC Bioinformatics 2006, 7 (Suppl 5):S10 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition Richard Tzong-Han Tsai, Cheng-Lung Sung, Hong-Jie Dai, Hsieh-Chuan Hung, Ting-Yi Sung, Wen-Lian Hsu BMC Bioinformatics 2006, 7 (Suppl 5):S11 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Curation of viral genomes: challenges, applications and the way forward Urmila Kulkarni-Kale, Shriram G Bhosle, G Sunitha Manjari, Manali Joshi, Sandeep Bansode, Ashok S Kolaskar BMC Bioinformatics 2006, 7 (Suppl 5):S12 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Prediction of the functional class of metal-binding proteins from sequence derived physicochemical properties by support vector machine approach HH Lin, LY Han, HL Zhang, CJ Zheng, B Xie, ZW Cao, YZ Chen BMC Bioinformatics 2006, 7 (Suppl 5):S13 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
SVM-based prediction of caspase substrate cleavage sites Lawrence JK Wee, Tin Wee Tan, Shoba Ranganathan BMC Bioinformatics 2006, 7 (Suppl 5):S14 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Splice site identification using probabilistic parameters and SVM classification AKMA Baten, BCH Chang, SK Halgamuge, Jason Li BMC Bioinformatics 2006, 7 (Suppl 5):S15 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
SPIDer: Saccharomyces protein-protein interaction database Xiaomei Wu, Lei Zhu, Jie Guo, Cong Fu, Hongjun Zhou, Dong Dong, Zhenbo Li, Da-Yong Zhang, Kui Lin BMC Bioinformatics 2006, 7 (Suppl 5):S16 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Modelling study of dimerization in mammalian defensins Anita Suresh, Chandra Verma BMC Bioinformatics 2006, 7 (Suppl 5):S17 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology Chung-Yen Lin, Shu-Hwa Chen, Chi-Shiang Cho, Chia-Ling Chen, Fan-Kai Lin, Chieh-Hua Lin, Pao-Yang Chen, Chen-Zen Lo, Chao A Hsiung BMC Bioinformatics 2006, 7 (Suppl 5):S18 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
An evaluation of human protein-protein interaction data in the public domain Suresh Mathivanan, Balamurugan Periaswamy, TKB Gandhi, Kumaran Kandasamy, Shubha Suresh, Riaz Mohmood, YL Ramachandra, Akhilesh Pandey BMC Bioinformatics 2006, 7 (Suppl 5):S19 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
MicroTar: predicting microRNA targets from RNA duplexes Rahul Thadani, Martti T Tammi BMC Bioinformatics 2006, 7 (Suppl 5):S20 (18 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
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