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Editor-in-Chief Melissa Norton, MD
Biology Editor Penelope Webb, PhD
In-house Editor Matthew Kaiser PhD
Welcome to BMC Genomics published by BioMed Central
BMC Genomics is an open access journal publishing original peer-reviewed research articles in all aspects of genome-scale analysis, functional genomics, and proteomics.
BMC Genomics (ISSN 1471-2164) is indexed/tracked/covered by PubMed, MEDLINE, BIOSIS, CAS, EMBASE, Scopus, Zoological Record, Thomson Reuters (ISI) and Google Scholar.
BMC Genomics 2009, 10 :602
Comparing the in vivo and in vitro nucleosome occupancy around transcription factor binding sites in yeast identifies four distinct modes of nucleosome positioning, associated with different promoter properties and patterns of gene regulation.
BMC Genomics 2009, 10 :598
Atypical non-cloverleaf tRNAs are computationally predicted from the mitochondrial sequence of acariform mite Dermatophagoides farina, and rank among the shortest known tRNAs, having no D-arm and a short and unstable T-arm.
BMC Genomics 2009, 10 :587
Candidate genes for peach fruit texture, flavor, pigmentation and chilling injury resistance have been anchored to a linkage map by bin-mapping to give a snapshot of the location of over 100 potentially useful loci for selective breeding.
BMC Genomics 2009, 10 :582
A high-density consensus genetic map of barley based only on complete and error-free datasets and genic markers, enables a high resolution comparison of barley and rice genomes and will aid marker-assisted breeding and association studies.
BMC Genomics 2009, 10 :568
Recent advances in quantitative trait analysis of metabolites enable the detection of correlations between metabolic diversity in rice accessions and local genetic variations, illustrating an approach that will help elucidate complex regulatory networks in plant metabolic systems.
Volume 10 Suppl 3
Proceedings
Singapore. 7-11 September 2009
Volume 10 Suppl 2
Proceedings
Starkville, MS, USA. 19 Volume 10 Suppl 1
Research
Las Vegas, NV, USA. 14
more info ]
Research article
Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions Konstantin V. Gunbin, Dmitry A. Afonnikov, Nikolay A. Kolchanov BMC Genomics 2009, 10 :639 (30 [Abstract ] [Provisional PDF ]
Research article
Transcriptional modifications following exercise in Thoroughbred horse skeletal muscle highlight molecular mechanisms that lead to muscle hypertrophy. Beatrice A McGivney, Suzanne S Eivers, David E MacHugh, James N MacLeod, Grace M O'Gorman, Stephen D.E. Park, Lisa M Katz, Emmeline W Hill BMC Genomics 2009, 10 :638 (30 [Abstract ] [Provisional PDF ]
Research article
Genome-wide loss-of-function analysis of deubiquitylating enzymes for zebrafish development William K. F. Tse, Birgit Eisenhaber, Steven H.-K. Ho, Qimei Ng, Frank Eisenhaber, Yun-Jin Jiang BMC Genomics 2009, 10 :637 (30 [Abstract ] [Provisional PDF ]
Research article
A bi-dimensional genome scan for prolificacy traits in pigs shows the existence of multiple epistatic QTL Jose L Noguera, Carmen Rodriguez, Luis Varona, Anna Tomas, Gloria Munoz, Oscar Ramirez, Carmen Barragan, Meritxell Arque, Jean P Bidanel, Marcel Amills, Cristina Ovilo, Armand Sanchez BMC Genomics 2009, 10 :636 (29 [Abstract ] [Provisional PDF ]
Software
3PD: Rapid design of optimal primers for chromosome conformation capture assays Sebastian Frohler, Christoph Dieterich BMC Genomics 2009, 10 :635 (29 [Abstract ] [Provisional PDF ]
Research article
Comprehensive in silico prediction and analysis of chlamydial outer membrane proteins reflects evolution and life style of the Chlamydiae Eva Heinz, Patrick Tischler, Thomas Rattei, Garry Myers, Michael Wagner, Matthias Horn BMC Genomics 2009, 10 :634 (29 [Abstract ] [Provisional PDF ]
Research article
Sympatric ecological speciation meets pyrosequencing: sampling the transcriptome of the apple maggot Rhagoletis pomonella. Dietmar Schwarz, Hugh M. Robertson, Jeffrey L. Feder, Kranthi Varala, Matthew E. Hudson, Gregory J. Ragland, Daniel A. Hahn, Stewart H. Berlocher BMC Genomics 2009, 10 :633 (27 [Abstract ] [Provisional PDF ] [PubMed ] [Related articles ]
Research article
Large-scale identification of odorant-binding proteins and chemosensory proteins from expressed sequence tags in insects Ya-Long Xu, Peng He, Lan Zhang, Shao-Qing Fang, Shuang-Lin Dong, Yong-Jun Zhang, Fei Li BMC Genomics 2009, 10 :632 (25 [Abstract ] [Provisional PDF ] [PubMed ] [Related articles ]
Research article
The repertoire of equine intestinal alpha-defensins. Oliver Bruhn, Sven Paul, Jens Tetens, Georg Thaller BMC Genomics 2009, 10 :631 (23 [Abstract ] [Provisional PDF ] [PubMed ] [Related articles ]
Research article
Identification of mammalian orthologs using local synteny Jin Jun, Ion I Mandoiu, Craig E Nelson BMC Genomics 2009, 10 :630 (23 [Abstract ] [Provisional PDF ] [PubMed ] [Related articles ]
Methodology article
A white-box approach to microarray probe response characterization: the BaFL pipeline Kevin J Thompson, Hrishikesh Deshmukh, Jeffrey L Solka, Jennifer W Weller BMC Bioinformatics 2009, 10 :449 (29 [Abstract ] [Provisional PDF ]
Research article
Gene expression profiling supports the hypothesis that human ovarian surface epithelia are multipotent and capable of serving as ovarian cancer initiating cells
Nathan J Bowen, L DEETTE Walker, Lilya V Matyunina, Sanjay Logani, Kimberly A Totten, Benedict B Benigno, John F McDonald BMC Medical Genomics 2009, 2 :71 (29 [Abstract ] [Provisional PDF ]
Research
Persistence of accuracy of genome-wide breeding values over generations when including a polygenic effect
Trygve R Solberg, Anna K Sonesson, John A Woolliams, Jorgen Odegard, Theo HE Meuwissen Genetics Selection Evolution 2009, 41 :53 (29 [Abstract ] [Provisional PDF ]
Software
Next generation transcriptomes for next generation genomes using est2assembly
Alexie Papanicolaou, Remo Stierli, Richard H ffrench-Constant, David G Heckel BMC Bioinformatics 2009, 10 :447 (24 [Abstract ] [Provisional PDF ] [PubMed ] [Related articles ]
Methodology article
Data mining of enzymes using specific peptides Uri Weingart, Yair Lavi, David Horn BMC Bioinformatics 2009, 10 :446 (24 [Abstract ] [Provisional PDF ] [PubMed ] [Related articles ]
Research article
Ranges of control in the transcriptional regulation of Escherichia coli Nikolaus Sonnenschein, Marc-Thorsten Hutt, Helga Stoyan, Dietrich Stoyan BMC Systems Biology 2009, 3 :119 (24 [Abstract ] [Provisional PDF ] [PubMed ] [Related articles ]
Research article
Copia and Gypsy retrotransposons activity in sunflower (Helianthus annuus L.) Marco Vukich, Tommaso Giordani, Lucia Natali, Andrea Cavallini BMC Plant Biology 2009, 9 :150 (23 [Abstract ] [Provisional PDF ] [PubMed ] [Related articles ]
Short communication
microRNA evaluation of unknown primary lesions in the head and neck Emma V Barker, Nilva K Cervigne, Patricia P Reis, Rashmi S Goswami, Wei Xu, Ilan Weinreb, Jonathan C Irish, Suzanne Kamel-Reid Molecular Cancer 2009, 8 :127 (23 [Abstract ] [Provisional PDF ] [PubMed ] [Related articles ]
Research article
G+C content dominates intrinsic nucleosome occupancy Desiree Tillo, Timothy R Hughes BMC Bioinformatics 2009, 10 :442 (22 [Abstract ] [Provisional PDF ] [PubMed ] [Related articles ]
Method
A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data Desmond S Lun, Ashley Sherrid, Brian Weiner, David R Sherman, James E Galagan Genome Biology 2009, 10 :R142 (22 [Abstract ] [Provisional PDF ] [PubMed ] [Related articles ]
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