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BMC Genomics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 13 Supplement 1

Selected articles from the Tenth Asia Pacific Bioinformatics Conference (APBC 2012)

Proceedings

The Tenth Asia Pacific Bioinformatics Conference (APBC 2012)

Melbourne, Australia

17-19 January 2012

Edited by Yi-Ping Phoebe Chen and Peer Bork

Conference website

Introduction   Open Access

The Tenth Asia Pacific Bioinformatics Conference (APBC 2012)

Yi-Ping Phoebe Chen, Peer Bork BMC Genomics 2012, 13(Suppl 1):I1 (17 January 2012)

Full text | PDF | PubMed

Proceedings   Open Access

Improving ChIP-seq peak-calling for functional co-regulator binding by integrating multiple sources of biological information

Hatice Osmanbeyoglu, Ryan J Hartmaier, Steffi Oesterreich, Xinghua Lu BMC Genomics 2012, 13(Suppl 1):S1 (17 January 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Detection of interacting transcription factors in human tissues using predicted DNA binding affinity

Alena Myšičková, Martin Vingron BMC Genomics 2012, 13(Suppl 1):S2 (17 January 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group

Tzong-Yi Lee, Wen-Chi Chang, Justin Hsu, Tzu-Hao Chang, Dray-Ming Shien BMC Genomics 2012, 13(Suppl 1):S3 (17 January 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Quantification and clustering of phenotypic screening data using time-series analysis for chemotherapy of schistosomiasis

Hyokyeong Lee, Asher Moody-Davis, Utsab Saha, Brian M Suzuki, Daniel Asarnow, Steven Chen, Michelle Arkin, Conor R Caffrey, Rahul Singh BMC Genomics 2012, 13(Suppl 1):S4 (17 January 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Learning generative models of molecular dynamics

Narges Razavian, Hetunandan Kamisetty, Christopher J Langmead BMC Genomics 2012, 13(Suppl 1):S5 (17 January 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing

Kaname Kojima, Seiya Imoto, Rui Yamaguchi, André Fujita, Mai Yamauchi, Noriko Gotoh, Satoru Miyano BMC Genomics 2012, 13(Suppl 1):S6 (17 January 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

A mixture framework for inferring ancestral gene orders

Yiwei Zhang, Fei Hu, Jijun Tang BMC Genomics 2012, 13(Suppl 1):S7 (17 January 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

A model for biased fractionation after whole genome duplication

David Sankoff, Chunfang Zheng, Baoyong Wang BMC Genomics 2012, 13(Suppl 1):S8 (17 January 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Construction and analysis of a plant non-specific lipid transfer protein database (nsLTPDB)

Nai-Jyuan Wang, Chi-Ching Lee, Chao-Sheng Cheng, Wei-Cheng Lo, Ya-Fen Yang, Ming-Nan Chen, Ping-Chiang Lyu BMC Genomics 2012, 13(Suppl 1):S9 (17 January 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Identification of gene-oriented exon orthology between human and mouse

Gloria C-L Fu, Wen-chang Lin BMC Genomics 2012, 13(Suppl 1):S10 (17 January 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

A study on promoter characteristics of head-to-head genes in Saccharomyces cerevisiae

Darby Tien-Hao Chang, Chi-Yeh Wu, Chen-Yu Fan BMC Genomics 2012, 13(Suppl 1):S11 (17 January 2012)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

An estimation method for inference of gene regulatory net-work using Bayesian network with uniting of partial problems

Yukito Watanabe, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda BMC Genomics 2012, 13(Suppl 1):S12 (17 January 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

miRNA arm selection and isomiR distribution in gastric cancer

Sung-Chou Li, Yu-Lun Liao, Meng-Ru Ho, Kuo-Wang Tsai, Chun-Hung Lai, Wen-chang Lin BMC Genomics 2012, 13(Suppl 1):S13 (17 January 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

CPU-GPU hybrid accelerating the Zuker algorithm for RNA secondary structure prediction applications

Guoqing Lei, Yong Dou, Wen Wan, Fei Xia, Rongchun Li, Meng Ma, Dan Zou BMC Genomics 2012, 13(Suppl 1):S14 (17 January 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics

Trupti Joshi, Kapil Patil, Michael R Fitzpatrick, Levi D Franklin, Qiuming Yao, Jeffrey R Cook, Zheng Wang, Marc Libault, Laurent Brechenmacher, Babu Valliyodan, Xiaolei Wu, Jianlin Cheng, Gary Stacey, Henry T Nguyen, Dong Xu BMC Genomics 2012, 13(Suppl 1):S15 (17 January 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central


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