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BMC Bioinformatics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 13 Supplement 4

Italian Society of Bioinformatics (BITS): Annual Meeting 2011

Research

Eighth Annual Meeting of the Italian Society of Bioinformatics (BITS)

Pisa, Italy

20-22 June 2011

Edited by Paolo Romano and Manuela Helmer-Citterich

Conference website

Introduction   Open Access

Bioinformatics in Italy: BITS2011, the Eighth Annual Meeting of the Italian Society of Bioinformatics

Paolo Romano, Manuela Helmer-Citterich BMC Bioinformatics 2012, 13(Suppl 4):I1 (28 March 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee

Jia-Ming Chang, Paolo Di Tommaso, Jean-François Taly, Cedric Notredame BMC Bioinformatics 2012, 13(Suppl 4):S1 (28 March 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

PyMod: sequence similarity searches, multiple sequence-structure alignments, and homology modeling within PyMOL

Emanuele Bramucci, Alessandro Paiardini, Francesco Bossa, Stefano Pascarella BMC Bioinformatics 2012, 13(Suppl 4):S2 (28 March 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Tandem repeats discovery service (TReaDS) applied to finding novel cis-acting factors in repeat expansion diseases

Marco Pellegrini, Maria Elena Renda, Alessio Vecchio BMC Bioinformatics 2012, 13(Suppl 4):S3 (28 March 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity database

Paolo Pannarale, Domenico Catalano, Giorgio De Caro, Giorgio Grillo, Pietro Leo, Graziano Pappadà, Francesco Rubino, Gaetano Scioscia, Flavio Licciulli BMC Bioinformatics 2012, 13(Suppl 4):S4 (28 March 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

An ICT infrastructure to integrate clinical and molecular data in oncology research

Daniele Segagni, Valentina Tibollo, Arianna Dagliati, Alberto Zambelli, Silvia G Priori, Riccardo Bellazzi BMC Bioinformatics 2012, 13(Suppl 4):S5 (28 March 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access Highly Accessed

OREMPdb: a semantic dictionary of computational pathway models

Renato Umeton, Giuseppe Nicosia, C Forbes Dewey BMC Bioinformatics 2012, 13(Suppl 4):S6 (28 March 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Towards linked open gene mutations data

Achille Zappa, Andrea Splendiani, Paolo Romano BMC Bioinformatics 2012, 13(Suppl 4):S7 (28 March 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Fine-tuning anti-tumor immunotherapies via stochastic simulations

Giulio Caravagna, Roberto Barbuti, Alberto d'Onofrio BMC Bioinformatics 2012, 13(Suppl 4):S8 (28 March 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Characterization of the emergent properties of a synthetic quasi-cellular system

Lorenzo Lazzerini-Ospri, Pasquale Stano, PierLuigi Luisi, Roberto Marangoni BMC Bioinformatics 2012, 13(Suppl 4):S9 (28 March 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Stochastic simulations of minimal cells: the Ribocell model

Fabio Mavelli BMC Bioinformatics 2012, 13(Suppl 4):S10 (28 March 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Characterization of an inducible promoter in different DNA copy number conditions

Susanna Zucca, Lorenzo Pasotti, Giuliano Mazzini, Maria Gabriella Cusella De Angelis, Paolo Magni BMC Bioinformatics 2012, 13(Suppl 4):S11 (28 March 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

In-silico and in-vivo analyses of EST databases unveil conserved miRNAs from Carthamus tinctorius and Cynara cardunculus

Domenico Catalano, Domenico Pignone, Gabriella Sonnante, Mariella M Finetti-Sialer BMC Bioinformatics 2012, 13(Suppl 4):S12 (28 March 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Design of a multi-signature ensemble classifier predicting neuroblastoma patients' outcome

Andrea Cornero, Massimo Acquaviva, Paolo Fardin, Rogier Versteeg, Alexander Schramm, Alessandra Eva, Maria Bosco, Fabiola Blengio, Sara Barzaghi, Luigi Varesio BMC Bioinformatics 2012, 13(Suppl 4):S13 (28 March 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms

Marco Falda, Stefano Toppo, Alessandro Pescarolo, Enrico Lavezzo, Barbara Di Camillo, Andrea Facchinetti, Elisa Cilia, Riccardo Velasco, Paolo Fontana BMC Bioinformatics 2012, 13(Suppl 4):S14 (28 March 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Primates and mouse NumtS in the UCSC Genome Browser

Francesco Maria Calabrese, Domenico Simone, Marcella Attimonelli BMC Bioinformatics 2012, 13(Suppl 4):S15 (28 March 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Intuitive representation of surface properties of biomolecules using BioBlender

Raluca Andrei, Marco Callieri, Maria Zini, Tiziana Loni, Giuseppe Maraziti, Mike Pan, Monica Zoppè BMC Bioinformatics 2012, 13(Suppl 4):S16 (28 March 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities

Valerio Bianchi, Pier Federico Gherardini, Manuela Helmer-Citterich, Gabriele Ausiello BMC Bioinformatics 2012, 13(Suppl 4):S17 (28 March 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii

Federico Fogolari, Alessandra Corazza, Vijaylakshmi Yarra, Anusha Jalaru, Paolo Viglino, Gennaro Esposito BMC Bioinformatics 2012, 13(Suppl 4):S18 (28 March 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

CONS-COCOMAPS: a novel tool to measure and visualize the conservation of inter-residue contacts in multiple docking solutions

Anna Vangone, Romina Oliva, Luigi Cavallo BMC Bioinformatics 2012, 13(Suppl 4):S19 (28 March 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

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