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BMC Bioinformatics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 11 Supplement 5

Workshop on Advances in Bio Text Mining

Meeting abstracts

Workshop on Advances in Bio Text Mining

Ghent, Belgium

10-11 May 2010

Edited by Thomas Abeel and Sofie Van Landeghem

Conference website

Introduction   Open Access

Highlights of the BioTM 2010 workshop on advances in bio text mining

Thomas Abeel, Sofie Van Landeghem, Roser Morante, Vincent Van Asch, Yves Van de Peer, Walter Daelemans, Yvan Saeys BMC Bioinformatics 2010, 11(Suppl 5):I1 (6 October 2010)

Full text | PDF | PubMed

Oral presentation   Open Access

The PPI affix dictionary (PPIAD) and BioMethod Lexicon: importance of affixes and tags for recognition of entity mentions and experimental protein interactions

Martin Krallinger, Ashish V Tendulkar, Florian Leitner, Andrew Chatr-aryamontri, Alfonso Valencia BMC Bioinformatics 2010, 11(Suppl 5):O1 (6 October 2010)

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Oral presentation   Open Access

Event extraction on PubMed scale

Filip Ginter, Jari Björne, Sampo Pyysalo BMC Bioinformatics 2010, 11(Suppl 5):O2 (6 October 2010)

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Oral presentation   Open Access

Integrating text mining into high-throughput assay analysis

K Cohen BMC Bioinformatics 2010, 11(Suppl 5):O3 (6 October 2010)

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Oral presentation   Open Access

Pitfalls in applying text mining to scientific literature

Jean-Marc Neefs BMC Bioinformatics 2010, 11(Suppl 5):O4 (6 October 2010)

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Oral presentation   Open Access

Integrating automated literature searches and text mining in biomarker discovery

Maté Ongenaert, Luc Dehaspe BMC Bioinformatics 2010, 11(Suppl 5):O5 (6 October 2010)

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Oral presentation   Open Access

Entities, relations, events: representing biomolecular semantics

Sampo Pyysalo BMC Bioinformatics 2010, 11(Suppl 5):O6 (20 September 2010)

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Poster presentation   Open Access

Functional variation of alternative splice forms in their protein interaction networks: a literature mining approach

Şenay Kafkas, Ekrem Varoğlu, Dietrich Rebholz-Schuhmann, Bahar Taneri BMC Bioinformatics 2010, 11(Suppl 5):P1 (6 October 2010)

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Poster presentation   Open Access

Supporting the search for cross-context links by outlier detection methods

Borut Sluban, Nada Lavrač BMC Bioinformatics 2010, 11(Suppl 5):P2 (6 October 2010)

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Poster presentation   Open Access

Semantic integration of isolation habitat and location in StrainInfo

Bert Verslyppe, Wim De Smet, Paul De Vos, Bernard De Baets, Peter Dawyndt BMC Bioinformatics 2010, 11(Suppl 5):P3 (6 October 2010)

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Poster presentation   Open Access

Identification of concepts bridging diverse biomedical domains

Matjaž Juršič, Igor Mozetič, Miha Grčar, Bojan Cestnik, Nada Lavrač BMC Bioinformatics 2010, 11(Suppl 5):P4 (6 October 2010)

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Poster presentation   Open Access

Species identification for gene name normalization

Illés Solt, Domonkos Tikk, Ulf Leser BMC Bioinformatics 2010, 11(Suppl 5):P5 (6 October 2010)

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Poster presentation   Open Access

BioLMiner and the BioCreative II.5 challenge

Yifei Chen, Feng Liu, Bernard Manderick BMC Bioinformatics 2010, 11(Suppl 5):P6 (6 October 2010)

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Poster presentation   Open Access

Medie and Info-pubmed: 2010 update

Tomoko Ohta, Takuya Matsuzaki, Naoaki Okazaki, Makoto Miwa, Rune Sætre, Sampo Pyysalo, Jun’ichi Tsujii BMC Bioinformatics 2010, 11(Suppl 5):P7 (6 October 2010)

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Poster presentation   Open Access

A fast and effective dependency graph kernel for PPI relation extraction

Domonkos Tikk, Peter Palaga, Ulf Leser BMC Bioinformatics 2010, 11(Suppl 5):P8 (6 October 2010)

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Poster presentation   Open Access

Extracting drug-drug interactions from biomedical texts

Isabel Segura-Bedmar, Paloma Martínez, César de Pablo-Sánchez BMC Bioinformatics 2010, 11(Suppl 5):P9 (6 October 2010)

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