Additional file 3.

Example of a bead-train polymer definition file. This brownmove protein definition file gives an example for how a short bead-train polymer as sketched in Figure 2B can be defined in brownmove. It consists of three rotating beads which have a van-der-Waals sphere and off-center hooks for the springs between adjacent beads. For more details see the comments in the file.

Format: BDEF Size: 2KB Download file

Geyer BMC Biophysics 2011 4:7   doi:10.1186/2046-1682-4-7