This article is part of the supplement: EADGENE and SABRE Post-analyses Workshop
Research
Microarray data mining using Bioconductor packages
1 Animal Breeding and Genomics Centre, Wageningen University, Marijkeweg 40, P.O. Box 338, 6700 AH, Wageningen, The Netherlands
2 Laboratory of Bioinformatics, Wageningen University, Dreijenlaan 3, P.O. Box 569, 6700 AN, Wageningen, The Netherlands
3 Department of Biology, University of Padova, Via G. Colombo 3, 35121, Padova, Italy
4 Department of Biomedical Sciences, University of Modena and Reggio Emilia, via Campi 287, 41100, Modena, Italy
BMC Proceedings 2009, 3(Suppl 4):S9 doi:10.1186/1753-6561-3-S4-S9
Published: 16 July 2009Additional files
Additional file 1:
GO enrichment analysis results with selected immune related GO terms. This table shows GO enrichment results with selected GO_BP terms. (For contrasts MM8.PM8 and MM8.MM24 results, only immune-related GO_BP terms which have at least two genes linked to each one of them were included).
Format: XLS Size: 25KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 2:
GO term enrichment results (raw p-value <0.05) using chicken genes. This table shows the GO enrichment analysis results using chicken gene information.
Format: XLS Size: 51KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 3:
GO term enrichment results (raw p-value < 0.05) using chicken-human orthologous genes. This table shows the GO term enrichment analysis results using chicken-human orthologous genes information.
Format: XLS Size: 57KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 4:
Differentially expressed chromosomal regions for MM8-PM8 contrast. This table shows the chromosomal locations of three up-regulated chromosomal regions and one down-regulated chromosomal region for MM8-PM8 contrast.
Format: XLS Size: 1KB Download file
This file can be viewed with: Microsoft Excel Viewer
