Editor-in-Chief Melissa Norton, MD
Project Managers Jo Baker Ros Dignon Nadine McKoy Isobel Peters
BMC Proceedings publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 3 Suppl 4
EADGENE and SABRE Post-analyses Workshop
Proceedings
from EADGENE and SABRE Post-analyses Workshop
Lelystad, The Netherlands. 12
14 November 2008
Edited by Dirk-Jan de Koning
The publication of these proceedings was supported by the EC-funded Network of Excellence EADGENE (EC contract number FOOD-CT-2004-506416).
Introduction
The EADGENE and SABRE post-analyses workshop Florence Jaffrezic, Jakob Hedegaard, Magali SanCristobal, Christophe Klopp, Dirk-Jan de Koning BMC Proceedings 2009, 3 (Suppl 4):I1 (16 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis Pieter BT Neerincx, Pierrot Casel, Dennis Prickett, Haisheng Nie, Michael Watson, Jack AM Leunissen, Martien AM Groenen, Christophe Klopp BMC Proceedings 2009, 3 (Suppl 4):S1 (16 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
IMAD: flexible annotation of microarray sequences Dennis Prickett, Michael Watson BMC Proceedings 2009, 3 (Suppl 4):S2 (16 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters Pierrot Casel, Fran BMC Proceedings 2009, 3 (Suppl 4):S3 (16 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
OligoRAP Pieter BT Neerincx, Han Rauwerda, Haisheng Nie, Martien AM Groenen, Timo M Breit, Jack AM Leunissen BMC Proceedings 2009, 3 (Suppl 4):S4 (16 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Methods for interpreting lists of affected genes obtained in a DNA microarray experiment Jakob Hedegaard, Cristina Arce, Silvio Bicciato, Agnet al. BMC Proceedings 2009, 3 (Suppl 4):S5 (16 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Biological pathway analysis by ArrayUnlock and Ingenuity Pathway Analysis BMC Proceedings 2009, 3 (Suppl 4):S6 (16 [Abstract ] [Full text ] [PDF ]
Research
Use of GenMAPP and MAPPFinder to analyse pathways involved in chickens infected with the protozoan parasite Eimeria Dennis Prickett, Michael Watson BMC Proceedings 2009, 3 (Suppl 4):S7 (16 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Gene set analysis methods applied to chicken microarray expression data Axel Skarman, Li Jiang, Henrik Hornsh BMC Proceedings 2009, 3 (Suppl 4):S8 (16 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Microarray data mining using Bioconductor packages Haisheng Nie, Pieter BT Neerincx, Jan van der Poel, Francesco Ferrari, Silvio Bicciato, Jack AM Leunissen, Martien AM Groenen BMC Proceedings 2009, 3 (Suppl 4):S9 (16 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Globaltest and GOEAST: two different approaches for Gene Ontology analysis Ina Hulsegge, Arun Kommadath, Mari A Smits BMC Proceedings 2009, 3 (Suppl 4):S10 (16 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Pathway results from the chicken data set using GOTM, Pathway Studio and Ingenuity softwares Agn BMC Proceedings 2009, 3 (Suppl 4):S11 (16 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Gene network reconstruction from microarray data Florence Jaffrezic, Gwenola Tosser-Klopp BMC Proceedings 2009, 3 (Suppl 4):S12 (16 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Predicting qualitative phenotypes from microarray data Christ BMC Proceedings 2009, 3 (Suppl 4):S13 (16 [Abstract ] [Full text ] [PDF ]
Research
Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigs Vincent Jouffe, Suzanne Rowe, Laurence Liaubet, Bart Buitenhuis, Henrik Hornsh BMC Proceedings 2009, 3 (Suppl 4):S14 (16 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
14 November 2008
ois Moreews, Sandrine Lagarrigue, Christophe Klopp
s Bonnet, Bart Buitenhuis, Melania Collado-Romero, Lene N Conley, Magali SanCristobal, Francesco Ferrari, Juan J Garrido, Martien AM Groenen, Henrik Hornsh
j, Ina Hulsegge, Li Jiang, 
ngeles Jim
nez-Mar
n, Arun Kommadath, Sandrine Lagarrigue, Jack AM Leunissen, Laurence Liaubet, Pieter BT Neerincx, et al.
Cao, Magali SanCristobal