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This article is part of the supplement: EADGENE and SABRE Post-analyses Workshop

Open Access Highly Accessed Research

Biological pathway analysis by ArrayUnlock and Ingenuity Pathway Analysis

Ángeles Jiménez-Marín, Melania Collado-Romero, María Ramirez-Boo, Cristina Arce and Juan J Garrido*

  • * Corresponding author: Juan J Garrido ge1gapaj@uco.es

  • † Equal contributors

Author Affiliations

Grupo de Genómica y Mejora Animal, Departamento de Genética, Facultad de Veterinaria, Universidad de Córdoba, Campus de Rabanales, Edificio C-5, 14071 Córdoba, Spain

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BMC Proceedings 2009, 3(Suppl 4):S6  doi:10.1186/1753-6561-3-S4-S6

Published: 16 July 2009

Additional files

Additional file 1:

Working files. Gene annotation, fold-change, and the identifier of the original data are shown.

Format: XLS Size: 213KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

ArrayUnlock Biological Process. File contains information about: biological function annotation; p-value and corrected p-value; number of genes of our list implicated in each annotation; number of gene from the ArrayUnlock database implicated in this annotation; and finally, a description of each GO biological function annotation.

Format: XLS Size: 152KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

ArrayUnlock Molecular Functions. File contains information about: biological function annotation; p-Value and corrected p-Value; number of genes of our list implicated in each annotation; number of gene from the ArrayUnlock database implicated in this annotation; and finally, a description of each GO biological function annotation.

Format: XLS Size: 52KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 4:

ArrayUnlock Cellular Components. File contains information about: biological function annotation; p-Value and corrected p-Value; number of genes of our list implicated in each annotation; number of gene from the ArrayUnlock database implicated in this annotation; and finally, a description of each GO biological function annotation.

Format: XLS Size: 125KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 5:

ArrayUnlock KEGG Pathways. File contains information about: biological function annotation; p-Value and corrected p-Value; number of genes of our list implicated in each annotation; number of gene from the ArrayUnlock database implicated in this annotation; and finally, a description of each GO biological function annotation.

Format: XLS Size: 33KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 6:

ArrayUnlock INTERPROMotifs. File contains information about: biological function annotation; p-Value and corrected p-Value; number of genes of our list implicated in each annotation; number of gene from the ArrayUnlock database implicated in this annotation; and finally, a description of each GO biological function annotation.

Format: XLS Size: 456KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 7:

Graphical representation as horizontal-bar (A) and pie chart (B) of the results obtained for Biological Process using ArrayUnlock software for the comparison MM8_PM8.

Format: DOC Size: 105KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional file 8:

IPA top Networks, BioFunctions and Canonical Pathways for the three comparisons analyzed.

Format: XLS Size: 521KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 9:

The first network identified by IPA analysis for MM8_MM24 and MM8-PM8 analysis.

Format: DOC Size: 281KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data