This article is part of the supplement: EADGENE and SABRE Post-analyses Workshop
Research
Biological pathway analysis by ArrayUnlock and Ingenuity Pathway Analysis
- † Equal contributors
Grupo de Genómica y Mejora Animal, Departamento de Genética, Facultad de Veterinaria, Universidad de Córdoba, Campus de Rabanales, Edificio C-5, 14071 Córdoba, Spain
BMC Proceedings 2009, 3(Suppl 4):S6 doi:10.1186/1753-6561-3-S4-S6
Published: 16 July 2009Additional files
Additional file 1:
Working files. Gene annotation, fold-change, and the identifier of the original data are shown.
Format: XLS Size: 213KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 2:
ArrayUnlock Biological Process. File contains information about: biological function annotation; p-value and corrected p-value; number of genes of our list implicated in each annotation; number of gene from the ArrayUnlock database implicated in this annotation; and finally, a description of each GO biological function annotation.
Format: XLS Size: 152KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 3:
ArrayUnlock Molecular Functions. File contains information about: biological function annotation; p-Value and corrected p-Value; number of genes of our list implicated in each annotation; number of gene from the ArrayUnlock database implicated in this annotation; and finally, a description of each GO biological function annotation.
Format: XLS Size: 52KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 4:
ArrayUnlock Cellular Components. File contains information about: biological function annotation; p-Value and corrected p-Value; number of genes of our list implicated in each annotation; number of gene from the ArrayUnlock database implicated in this annotation; and finally, a description of each GO biological function annotation.
Format: XLS Size: 125KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 5:
ArrayUnlock KEGG Pathways. File contains information about: biological function annotation; p-Value and corrected p-Value; number of genes of our list implicated in each annotation; number of gene from the ArrayUnlock database implicated in this annotation; and finally, a description of each GO biological function annotation.
Format: XLS Size: 33KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 6:
ArrayUnlock INTERPROMotifs. File contains information about: biological function annotation; p-Value and corrected p-Value; number of genes of our list implicated in each annotation; number of gene from the ArrayUnlock database implicated in this annotation; and finally, a description of each GO biological function annotation.
Format: XLS Size: 456KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 7:
Graphical representation as horizontal-bar (A) and pie chart (B) of the results obtained for Biological Process using ArrayUnlock software for the comparison MM8_PM8.
Format: DOC Size: 105KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional file 8:
IPA top Networks, BioFunctions and Canonical Pathways for the three comparisons analyzed.
Format: XLS Size: 521KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 9:
The first network identified by IPA analysis for MM8_MM24 and MM8-PM8 analysis.
Format: DOC Size: 281KB Download file
This file can be viewed with: Microsoft Word Viewer
