Additional file 2.

Key molecules and functional annotations for the factors in M 13 resulted from TCGA datasets. This.xls file has four sheets. The first one, named mRNA lists, listed the mRNAs identified for the factors (from F 1 to F 13) in M 13 using the FA based integrated method (joint analysis), each column includes the key mRNAs for one factor. The second sheet, named miRNA lists is to list the miRNAs for each factor. The third sheet, named FuncAnnos of mRNAs, are the functional analysis results of mRNAs, where the mRNAs of each factor are annotated using DAVID annotation tool to identify the significantly enriched terms. The last sheet, named FuncAnnos of mRNAs&miRNAs, are the functional annotations of the integration of mRNAs and miRNAs for F 7 and F 8, where mRNAs and miRNA targets predicted using TargetScan are merged for DAVID functional analysis.

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Liu et al. BMC Systems Biology 2013 7:14   doi:10.1186/1752-0509-7-14