Table 5

Performance comparison on Krogan_2006 with GO-CC

PPI networks

Krogan_2006

Evaluation Metric

MCL

MCODE

CFinder

COACH

CODEC-w0

CODEC-w1

Our method


Sensitivity

0.644

0.274

0.340

0.638

0.543

0.517

0.303

PPV

0.102

0.126

0.354

0.060

0.350

0.361

0.443

Accuracy

0.257

0.186

0.347

0.196

0.436

0.432

0.366

Complex-wise Homogeneity

0.049

0.039

0.076

0.015

0.241

0.225

0.138

Cluster-wise Homogeneity

0.450

0.469

0.511

0.002

0.026

0.046

0.729

Homogeneity

0.149

0.136

0.197

0.006

0.079

0.102

0.317


Cai et al. BMC Systems Biology 2012 6(Suppl 3):S4   doi:10.1186/1752-0509-6-S3-S4

Open Data