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BMC Systems Biology publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.

Volume 6 Supplement 3

The International Conference on Intelligent Biology and Medicine (ICIBM): Systems Biology

Research

The International Conference on Intelligent Biology and Medicine (ICIBM)

Nashville, TN, USA

22-24 April 2012

Edited by Zhongming Zhao, Bing Zhang, Yufei Huang, Hua Xu and Yu Shyr

The conference was supported by a grant from National Science Foundation, USA (1141979) and financial support from the Center for Quantitative Sciences, Vanderbilt University. There was no sponsorship or other external funding for publication of the supplement.

| Conference website

Introduction   Open Access

Advances in systems biology: computational algorithms and applications

Yufei Huang, Zhongming Zhao, Hua Xu, Yu Shyr, Bing Zhang BMC Systems Biology 2012, 6(Suppl 3):S1 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Mining functional subgraphs from cancer protein-protein interaction networks

Ru Shen, Nalin CW Goonesekere, Chittibabu Guda BMC Systems Biology 2012, 6(Suppl 3):S2 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Signaling network prediction by the Ontology Fingerprint enhanced Bayesian network

Tingting Qin, Lam C Tsoi, Kellie J Sims, Xinghua Lu, W Zheng BMC Systems Biology 2012, 6(Suppl 3):S3 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Detection of protein complexes from affinity purification/mass spectrometry data

Bingjing Cai, Haiying Wang, Huiru Zheng, Hui Wang BMC Systems Biology 2012, 6(Suppl 3):S4 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum

Hong Cai, Changjin Hong, Jianying Gu, Timothy G Lilburn, Rui Kuang, Yufeng Wang BMC Systems Biology 2012, 6(Suppl 3):S5 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

A strategy to study pathway cross-talks of cells under repetitive exposure to stimuli

Yan Fu, Xiaoshan Jiang, Hang Zhang, Jianhua Xing BMC Systems Biology 2012, 6(Suppl 3):S6 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Revealing functionally coherent subsets using a spectral clustering and an information integration approach

Adam J Richards, John H Schwacke, Bärbel Rohrer, L Ashley Cowart, Xinghua Lu BMC Systems Biology 2012, 6(Suppl 3):S7 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

A vertex similarity-based framework to discover and rank orphan disease-related genes

Cheng Zhu, Akash Kushwaha, Kenneth Berman, Anil G Jegga BMC Systems Biology 2012, 6(Suppl 3):S8 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

A dynamic time order network for time-series gene expression data analysis

Pengyue Zhang, Raphaël Mourad, Yang Xiang, Kun Huang, Tim Huang, Kenneth Nephew, Yunlong Liu, Lang Li BMC Systems Biology 2012, 6(Suppl 3):S9 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Mathematical modeling of left ventricular dimensional changes in mice during aging

Tianyi Yang, Ying Chiao, Yunji Wang, Andrew Voorhees, Hai-Chao Han, Merry L Lindsey, Yu-Fang Jin BMC Systems Biology 2012, 6(Suppl 3):S10 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Statistical aspects of omics data analysis using the random compound covariate

Pei-Fang Su, Xi Chen, Heidi Chen, Yu Shyr BMC Systems Biology 2012, 6(Suppl 3):S11 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

An improved dimensionality reduction method for meta-transcriptome indexing based diseases classification

Yin Wang, Yuhua Zhou, Yixue Li, Zongxin Ling, Yan Zhu, Xiaokui Guo, Hong Sun BMC Systems Biology 2012, 6(Suppl 3):S12 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Integrative pathway analysis of genome-wide association studies and gene expression data in prostate cancer

Peilin Jia, Yang Liu, Zhongming Zhao BMC Systems Biology 2012, 6(Suppl 3):S13 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Genetic studies of complex human diseases: Characterizing SNP-disease associations using Bayesian networks

Bing Han, Xue-wen Chen, Zohreh Talebizadeh, Hua Xu BMC Systems Biology 2012, 6(Suppl 3):S14 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data

Yu Liu, Sean Maxwell, Tao Feng, Xiaofeng Zhu, Robert C Elston, Mehmet Koyutürk, Mark R Chance BMC Systems Biology 2012, 6(Suppl 3):S15 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Genome-wide meta-analysis of genetic susceptible genes for Type 2 Diabetes

Paul J Hale, Alfredo M López-Yunez, Jake Y Chen BMC Systems Biology 2012, 6(Suppl 3):S16 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Cliques for the identification of gene signatures for colorectal cancer across population

Meeta P Pradhan, Kshithija Nagulapalli, Mathew J Palakal BMC Systems Biology 2012, 6(Suppl 3):S17 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

A cross-species analysis method to analyze animal models' similarity to human's disease state

Shuhao Yu, Lulu Zheng, Yun Li, Chunyan Li, Chenchen Ma, Yixue Li, Xuan Li, Pei Hao BMC Systems Biology 2012, 6(Suppl 3):S18 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

Potential metabolic mechanism of girls' central precocious puberty: a network analysis on urine metabonomics data

Linlin Yang, Kailin Tang, Ying Qi, Hao Ye, Wenlian Chen, Yongyu Zhang, Zhiwei Cao BMC Systems Biology 2012, 6(Suppl 3):S19 (17 December 2012)

Abstract | Full text | PDF | PubMed

Research   Open Access

A semantic proteomics dashboard (SemPoD) for data management in translational research

Catherine P Jayapandian, Meng Zhao, Rob M Ewing, Guo-Qiang Zhang, Satya S Sahoo BMC Systems Biology 2012, 6(Suppl 3):S20 (17 December 2012)

Abstract | Full text | PDF | PubMed

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