Table 4

PerformancecComparison on Krogan_2006 with CYC-2008

PPI networks

Krogan_2006

Evaluation Metric

MCL

MCODE

CFinder

COACH

CODEC-w0

CODEC-w1

Our method


Sensitivity

0.659

0.275

0.346

0.660

0.595

0.562

0.300

PPV

0.140

0.135

0.389

0.076

0399

0.422

0.550

Accuracy

0.304

0.193

0.366

0.224

0.487

0.487

0.406

Complex-wise Homogeneity

0.052

0.036

0.063

0.015

0.232

0.218

0.134

Cluster-wise Homogeneity

0.537

0.474

0.566

0.003

0.024

0.048

0.745

Homogeneity

0.373

0.323

0.216

0.036

0.156

0.188

0.529


Cai et al. BMC Systems Biology 2012 6(Suppl 3):S4   doi:10.1186/1752-0509-6-S3-S4

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