Table 2

Performance comparison on Gavin_2006 with CYC-2008

PPI networks

Gavin_2006

Evaluation Metric

MCL

MCODE

CFinder

COACH

CODEC-w0

CODEC-w1

Our method


Sensitivity

0.721

0.338

0.390

0.596

0.584

0.582

0.434

PPV

0.296

0.342

0.365

0.120

0.511

0.546

0.747

Accuracy

0.462

0.340

0.377

0.268

0.546

0.564

0.570

Complex-wise Homogeneity

0.156

0.123

0.087

0.048

0.234

0.272

0.318

Cluster-wise Homogeneity

0.875

0.748

0.613

0.030

0.086

0.107

0.848

Homogeneity

0.369

0.303

0.231

0.038

0.141

0.171

0.519


Cai et al. BMC Systems Biology 2012 6(Suppl 3):S4   doi:10.1186/1752-0509-6-S3-S4

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