Table 6

Significant pathways in prostate cancer microarray gene expression data detected by the GSEA method.

Pathway (KEGG ID)

ES

NES

P

FDR


Fc gamma R-mediated phagocytosis (hsa04666)*

0.645

1.809

< 0.001

0.131

Focal adhesion (hsa04510)

0.482

1.658

0.004

0.176

Dilated cardiomyopathy (hsa05414)

0.672

1.905

0.004

0.101

Hypertrophic cardiomyopathy (HCM) (hsa05410)

0.619

1.740

0.009

0.122

Regulation of actin cytoskeleton (hsa04810)*

0.464

1.714

0.009

0.128

Leukocyte transendothelial migration (hsa04670)

0.594

1.760

0.011

0.163

Arrhythmogenic right ventricular cardiomyopathy (ARVC) (hsa05412)

0.663

1.760

0.012

0.123


ES: enrichment score. NES: normalized enrichment score.

*Overlap with the Plink set-based results.

Overlap with the GenGen results.

Jia et al. BMC Systems Biology 2012 6(Suppl 3):S13   doi:10.1186/1752-0509-6-S3-S13

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