Figure 2.

Comparison of the significant pathways found in genome-wide association studies and microarray gene expression datasets by different methods. This Venn diagram shows the comparison of significant pathways detected using the prostate cancer GWAS dataset using three methods: GenGen, Plink set-based test (PlinkSet), and the SNP Ratio Test (SRT), and the significant pathways found in microarray gene expression data by the Gene Set Enrichment Analysis (GSEA) method. Note that ALIGATOR identified no significant pathways and was not included in the comparison.

Jia et al. BMC Systems Biology 2012 6(Suppl 3):S13   doi:10.1186/1752-0509-6-S3-S13