Table 3

Number of FGP unigenes that are best BLAST hits to Arabidopsis flowering time genes, with corresponding tribe ID number and number of Arabidopsis and rice genes in these tribes (species abbreviations as in Table 2)

Gene ID

Annotation

Tribe

Ath

Osa

Aam

Aof

Atr

Eca

Ltu

Nad

Pam

She

Wmi

Tot


At2g45660

AGL20, SOC

65

46

51

1

1

2

At4g24540

AGL24, MADS-box protein

65

46

51

At2g46830

CCA1, CIRCADIAN CLOCK ASSOCIATED 1

3546

2

1

1

2

At2g25920

ELF3

8701

1

1

At5g11530

EMF1, EMBRYONIC FLOWER 1

10070

1

0

At5g51230

EMF2, EMBRYONIC FLOWER 2

1026

5

6

1

3

4

At4g15880

ESD4, EARLY IN SHORT DAYS 4

10325

1

0

At4g16280

FCA, FCA

2386

2

0

At4g35900

FD, FD

6153

2

0

At1g04400

FHA (CYR2, CRYPTOCHROME 2)

2549

2

3

1

1

At1g68050

FKF1, FLAVIN-BINDING KELCH DOMAIN F BOX PROTEIN

1047

6

5

1

1

At5g10140

FLC, FLOWERING LOCUS F

65

46

51

At2g43410

FPA, FPA

2343

3

3

2

2

At5g24860

FPF1, FLOWERING PROMOTING FACTOR 1

311

11

16

1

1

At4g00650

FRI, FRIGIDA

6545

1

1

1

1

At1g65480

FT FLOWERING LOCUS T

397

6

17

At3g59380

FTA, FARNESYLTRANSFERASE A

2266

1

5

1

1

At3g30260

FUL, FRUITFULL, AGL8

65

46

51

At4g25530

FWA, FWA

230

18

15

At5g13480

FY, FY

7822

1

1

2

2

At1g14920

GAI, GA INSENSITIVE

74

27

62

At1g22770

GI, GIGANTEA

8967

1

1

1

3

2

2

1

10

At4g08920

HY4, ELONGATED HYPOCOTYL 4 (CRY1)

2549

2

3

1

3

5

At2g23380

ICU1, INCURVATA 1

2735

3

2

At4g02560

LD, LUMINIDEPENDENS

8840

1

1

2

2

At5g61850

LFY, LEAFY

7107

1

1

At1g01060

LHY, LATE ELONGATED HYPOCOTYL

3546

2

1

1

1

2

At1g77080

MAF1, MADS AFFECTING FLOWERING 1

65

46

51

At5g65050

MAF2.4, MADS AFFECTING FLOWERING2

65

46

51

At5g65060

MAF3, MADS AFFECTING FLOWERING 3

65

46

51

At5g65070

MAF4.5, MADS AFFECTING FLOWERING 4 VARIANT V

65

46

51

At5g65080

MAF5.2, MADS AFFECTING FLOWERING 5 VARIANT II

65

46

51

At2g19520

NFC4, FVE

1299

6

3

2

1

1

1

3

8

At1g09570

PHYA, FAR RED ELONGATED 1

1254

5

4

2

1

3

1

7

At2g18790

PHYB, PHYTOCHROME B

1254

5

4

1

1

2

1

5

At5g35840

PHYC, PHYTOCHROME DEFECTIVE C

1254

5

4

1

1

2

At4g16250

PHYD, PHYTOCHROME DEFECTIVE D

1254

5

4

At4g18130

PHYE, PHYTOCHROME DEFECTIVE E

1254

5

4

At1g73590

PIN1, PIN-FORMED 1

405

8

14

2

2

At2g01570

RGA1, REPRESSOR OF GA1-3 1

74

27

62

1

1

At1g02065

SPL8, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8

284

15

13

1

2

1

5

At3g11540

SPY, SPINDLY

6916

1

1

1

1

2

At2g22540

SVP, SHORT VEGETATIVE PHASE

65

46

51

1

1

1

3

At2g28290

SYD, SPLAYED

135

20

30

1

1

At2g26670

TED4, ELONGATED HYPOCOTYL 1

2358

4

2

1

1

At5g03840

TFL1, TERMINAL FLOWER 1

397

6

17

At5g17690

TFL2,

5181

1

2

1

1

1

4

At5g61380

TOC1, PSEUDO-RESPONSE REGULATOR 1

769

6

8

1

2

2

5

At5g61150

VIP4, VERNALIZATION INDEPENDENCE 4

2513

1

4

2

2

At3g18990

VRN1, REDUCED VERNALIZATION RESPONSE 1

4792

2

1

1

1

At4g16845

VRN2, REDUCED VERNALIZATION RESPONSE 2

1026

5

6

At1g80730

ZFP1, ZFP1

511

6

13

At5g57360

ZTL, ZEITLUPE

1047

2

1

3


Albert et al. BMC Plant Biology 2005 5:5   doi:10.1186/1471-2229-5-5

Open Data