Table 1

Description of bin distributions in the MapMan platform.

Bin

Name

Elements

p-value


1.1

PS.lightreaction

59

0.04

1.1.4

PS.lightreaction.ATP synthase

6

0.01

TCA/org. transformation.other organic acid

8.2.11

transformaitons.atp-citrate lyase

2

0.03

10.2

cell wall.cellulose synthesis

14

0.01

lipid metabolism.FA synthesis and FA elongation.long

11.1.9

chain fatty acid CoA ligase

5

0.004

12

N-metabolism

13

0.03

12.2

N-metabolism.ammonia metabolism

8

0.04

amino acid metabolism.synthesis.aspartate

13.1.3.4

family.methionine

9

0.046

16.1.4

secondary metabolism.isoprenoids.carotenoids

6

0.04

secondary metabolism.phenylpropanoids.lignin

16.2.1

biosynthesis

18

0.006

16.7

secondary metabolism.wax

4

0.027

16.8.2

secondary metabolism.flavonoids.chalcones

3

0.006

hormone metabolism.brassinosteroid.synthesis-

17.3.1.1.1

degradation.BRs.DET2

3

0.02

19.1

tetrapyrrole synthesis.magnesium chelatase

2

0.03

26.3

misc.gluco-, galacto- and mannosidases

22

0.01

27.1

RNA.processing

71

0.01

RNA.regulation of transcription.TCP transcription factor

27.3.29

family

6

0.04

29.1

protein.aa activation

32

0.02

29.2

protein.synthesis

200

0.004

protein.synthesis.chloroplast/mito – plastid ribosomal

29.2.1

protein

36

0.007

protein.synthesis.chloroplast/mito – plastid ribosomal

29.2.1.1

protein.plastid

21

0.04

29.2.2

protein.synthesis.misc ribososomal protein

106

0.01

29.4

protein.postranslational modification

186

0.03

protein.postranslational modification.kinase.receptor like

29.4.1.51

cytoplasmatic kinase I

2

0.03

29.5.11.4.3.2

protein.degradation.ubiquitin.E3.SCF.FBOX

58

0.01

29.6

protein.folding

25

0.006

30

signalling

267

0.02

30.3

signalling.calcium

59

0.01

35

not assigned

2150

0.02

35.2

not assigned.unknown

1191

0.003


The bin number of the microarray was also denoted from 1–100 and it was only shown for the bins with significant changes in transcript abundance at P < 0.05.

Yuan et al. BMC Genomics 2008 9(Suppl 2):S6   doi:10.1186/1471-2164-9-S2-S6

Open Data