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BMC Genomics

Supplements

Editor-in-Chief
Melissa Norton, MD

Biology Editor
Penelope Webb, PhD

In-house Editor
Matthew Kaiser PhD



BMC Genomics publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 9 Suppl 2
IEEE 7th International Conference on Bioinformatics and Bioengineering at Harvard Medical School
Research
from IEEE 7th International Conference on Bioinformatics and Bioengineering at Harvard Medical School
Boston, MA, USA. 1417 October 2007
Edited by Mary Qu Yang, Jack Y Yang, Hamid R Arabnia and Youping Deng

Introductory Review
Genomics, molecular imaging, bioinformatics, and bio-nano-info integration are synergistic components of translational medicine and personalized healthcare research
Jack Y Yang, Mary Qu Yang, Hamid R Arabnia, Youping Deng
BMC Genomics 2008, 9(Suppl 2):I1 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
The unfoldomics decade: an update on intrinsically disordered proteins
A Keith Dunker, Christopher J Oldfield, Jingwei Meng, Pedro Romero, Jack Y Yang, Jessica Walton Chen, Vladimir Vacic, Zoran Obradovic, Vladimir N Uversky
BMC Genomics 2008, 9(Suppl 2):S1 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
The FEATURE framework for protein function annotation: modeling new functions, improving performance, and extending to novel applications
Inbal Halperin, Dariya S Glazer, Shirley Wu, Russ B Altman
BMC Genomics 2008, 9(Suppl 2):S2 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Diversity of core promoter elements comprising human bidirectional promoters
Mary Qu Yang, Laura L Elnitski
BMC Genomics 2008, 9(Suppl 2):S3 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Protein intrinsic disorder toolbox for comparative analysis of viral proteins
Gerard Kian-Meng Goh, A Keith Dunker, Vladimir N Uversky
BMC Genomics 2008, 9(Suppl 2):S4 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Assessment of data processing to improve reliability of microarray experiments using genomic DNA reference
Yunfeng Yang, Mengxia Zhu, Liyou Wu, Jizhong Zhou
BMC Genomics 2008, 9(Suppl 2):S5 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
In silico comparison of transcript abundances during Arabidopsis thaliana and Glycine max resistance to Fusarium virguliforme
Jiazheng Yuan, Mengxia Zhu, David A Lightfoot, M Javed Iqbal, Jack Y Yang, Khalid Meksem
BMC Genomics 2008, 9(Suppl 2):S6 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
Biomarker discovery across annotated and unannotated microarray datasets using semi-supervised learning
Cole Harris, Noushin Ghaffari
BMC Genomics 2008, 9(Suppl 2):S7 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Predicting protein disorder by analyzing amino acid sequence
Jack Y Yang, Mary Qu Yang
BMC Genomics 2008, 9(Suppl 2):S8 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Analyzing adjuvant radiotherapy suggests a non monotonic radio-sensitivity over tumor volumes
Jack Y Yang, Andrzej Niemierko, Mary Qu Yang, Youping Deng
BMC Genomics 2008, 9(Suppl 2):S9 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Batch Blast Extractor: an automated blastx parser application
Mehdi Pirooznia, Edward J Perkins, Youping Deng
BMC Genomics 2008, 9(Suppl 2):S10 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
ILOOP a web application for two-channel microarray interwoven loop design
Mehdi Pirooznia, Ping Gong, Jack Y Yang, Mary Qu Yang, Edward J Perkins, Youping Deng
BMC Genomics 2008, 9(Suppl 2):S11 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Approaches to reduce false positives and false negatives in the analysis of microarray data: applications in type 1 diabetes research
Jian Wu, Nataliya I Lenchik, Ivan C Gerling
BMC Genomics 2008, 9(Suppl 2):S12 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
Improving the specificity of exon prediction using comparative genomics
Jing Wu
BMC Genomics 2008, 9(Suppl 2):S13 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Selecting informative genes for discriminant analysis using multigene expression profiles
Xin Yan, Tian Zheng
BMC Genomics 2008, 9(Suppl 2):S14 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Phylogenetic reconstruction from transpositions
Feng Yue, Meng Zhang, Jijun Tang
BMC Genomics 2008, 9(Suppl 2):S15 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Use artificial neural network to align biological ontologies
Jingshan Huang, Jiangbo Dang, Michael N Huhns, W Jim Zheng
BMC Genomics 2008, 9(Suppl 2):S16 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Array CGH data modeling and smoothing in Stationary Wavelet Packet Transform domain
Heng Huang, Nha Nguyen, Soontorn Oraintara, An Vo
BMC Genomics 2008, 9(Suppl 2):S17 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
A stable iterative method for refining discriminative gene clusters
Min Xu, Mengxia Zhu, Louxin Zhang
BMC Genomics 2008, 9(Suppl 2):S18 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Inferring gene regulatory networks by thermodynamic modeling
Chieh-Chun Chen, Sheng Zhong
BMC Genomics 2008, 9(Suppl 2):S19 (16September2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

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