Table 1

Validation by ChIP-chip data

Role

TF

# of target genes

# of genes verified in ChIP

Chi-Square

P-value


Activation

Nanog

39

12

10.46986

0.00121

Sox2

121

21

12.437

0.00042

Oct4

67

8

2.436113

0.11857

Klf4

49

18

13.90787

0.00019


Repression

Nanog

47

11

4.190152

0.04066

Sox2

132

19

5.778738

0.01622

Oct4

103

11

2.121288

0.145264

Klf4

62

14

1.335151

0.247891


Chen and Zhong BMC Genomics 2008 9(Suppl 2):S19   doi:10.1186/1471-2164-9-S2-S19

Open Data