Table 1

Training examples in OAANN.

Concepts from BiologicalProcess

Concepts from Pathway


lipoprotein_metabolic_process (0042157)

vs.

lipoprotein_metabolic_pathway (0000482)

inositol_phosphate_metabolic_process (0043647)

vs.

inositol_phosphate_metabolic_pathway (0000154)

glutathione_catabolic_process (0006751)

vs.

glutathione_metabolic_pathway (0000134)

brassinosteroid_biosynthetic_process (0016132)

vs.

brassinosteroid_biosynthetic_pathway (0000552)

gamma-aminobutyric_acid_catabolic_process (0009450)

vs.

gamma-aminobutyric_acid_metabolic_pathway (0000412)

chondroitin_sulfate_biosynthetic_process (0030206)

vs.

chondroitin_sulfate_biosynthetic_pathway (0000195)

generation_of_precursor_metabolites_and_energy (0010497)

vs.

energy_metabolic_pathway (248)

acetylcholine_catabolic_process (0006581)

vs.

acetylcholine_metabolic_pathway (0000408)

cell_cycle_checkpoint(0000075)

vs.

cell_cycle_checkpoint_pathway (0000094)

DNA_replication_checkpoint (0000076)

vs.

G2/M_DNA_replication_checkpoint_pathway (0000385)

purine_metabolic_process (0006143)

vs.

purine_metabolic_pathway (0000031)

dopamine_catabolic_process (0042420)

vs.

dopamine_metabolic_pathway (0000409)

epinephrine_catabolic_process (0042419)

vs.

epinephrine_metabolic_pathway (0000441)

leukotriene_metabolic_process (0006691)

vs.

leukotriene_metabolic_pathway (0000464)

norepinephrine_catabolic_process (0042422)

vs.

norepinephrine_metabolic_pathway (0000442)

ganglioside_biosynthetic_process (0001574)

vs.

ganglioside_biosynthetic_pathway (0000164)

glycine_catabolic_process (0006546)

vs.

glycine_metabolic_pathway (0000440)

glucose_homeostasis (0042593)

vs.

glucose_homeostasis_pathway (0000553)

aspartate_metabolic_process (0006531)

vs.

aspartate_metabolic_pathway (0000439)

arachidonic_acid_metabolic_process (0019369)

vs.

arachidonic_acid_metabolic_pathway (0000460)

histamine_catabolic_process (0001695)

vs.

histamine_metabolic_pathway (0000411)

alanine_metabolic_process (0006522)

vs.

alanine_metabolic_pathway (0000438)

glycogen_biosynthetic_process (0005978)

vs.

glycogen_biosynthetic_pathway (0000532)

germ_cell_programmed_cell_death (0035234)

vs.

altered_programmed_cell_death (0000287)

C21-steroid_hormone_catabolic_process (0008208)

vs.

C21-Steroid_hormone_metabolic_pathway (0000070)

glycerophospholipid_metabolic_process (0006650)

vs.

glycerophospholipid_metabolic_pathway (0000354)

regulated_secretory_pathway (0045055)

vs.

regulated_secretory_pathway (0000537)

linoleic_acid_metabolic_process (0043651)

vs.

linoleic_acid_metabolic_pathway (0000523)

serotonin_catabolic_process (0042429)

vs.

serotonin_metabolic_pathway (0000410)

globoside_metabolic_process (0001575)

vs.

globoside_metabolic_pathway (0000196)


Huang et al. BMC Genomics 2008 9(Suppl 2):S16   doi:10.1186/1471-2164-9-S2-S16

Open Data