Table 3

14 genes unique to G. max and having > = 12 SNPs in 1 kb upstream region.

Genes

Functional Annotations


Glyma01g04240.1

PF00931|PF00560|PF00560|PF00560|PF00560|PF00560|PF00560 NB-ARC domain|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repeat

Glyma03g05320.1

Glyma05g21440.1

PF00069|PF07714 Protein kinase domain|Protein tyrosine kinase

Glyma09g29090.1

Glyma12g09780.1

PF00106 short chain dehydrogenase

Glyma16g06560.1

Glyma16g24930.1

Glyma17g29450.1

PF01885 RNA 2'-phosphotransferase, Tpt1/KptA family

Glyma17g33900.1

PF00400|PF00400|PF00400|PF00400 WD domain, G-beta repeat|WD domain, G-beta repeat|WD domain, G-beta repeat|WD domain, G-beta repeat

Glyma18g42150.1

Glyma18g48950.1

PF00560|PF00560|PF00560|PF00560|PF00560|PF00560|PF00560|PF00560|PF00560|PF00560|PF00560|PF00069|PF07714 Leucine Rich Repeat|Leucine Rich Repeat|Leucine R

ich Repeat|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repea

t|Protein kinase domain|Protein tyrosine kinase

Glyma18g51960.1

PF00931 NB-ARC domain

Glyma19g07650.1

PF01582|PF00931|PF05729|PF00560|PF00560|PF00560|PF00560|PF00560|PF00560|PF00560|PF00560|PF00560 TIR domain|NB-ARC domain|NACHT domain|Leucine Rich Repeat

|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repeat|Leucine Rich Repeat

Glyma20g02020.1

PF00795 Carbon-nitrogen hydrolase


List of genes unique to G. max with > = 12 SNPs in 1 kb upstream region.

Joshi et al. BMC Genomics 2013 14(Suppl 1):S5   doi:10.1186/1471-2164-14-S1-S5

Open Data