Selected articles from the Eleventh Asia Pacific Bioinformatics Conference (APBC 2013): Genomics

Proceedings  

A unified approach for allele frequency estimation, SNP detection and association studies based on pooled sequencing data using EM algorithms

Quan Chen, Fengzhu Sun BMC Genomics 2013, 14(Suppl 1):S1 (21 January 2013)

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Proceedings  

A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing

Chih-Hung Chou, Feng-Mao Lin, Min-Te Chou, Sheng-Da Hsu, Tzu-Hao Chang, Shun-Long Weng, Sirjana Shrestha, Chiung-Chih Hsiao, Jui-Hung Hung, Hsien-Da Huang BMC Genomics 2013, 14(Suppl 1):S2 (21 January 2013)

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Proceedings  

Expanding the boundaries of local similarity analysis

W Evan Durno, Niels W Hanson, Kishori M Konwar, Steven J Hallam BMC Genomics 2013, 14(Suppl 1):S3 (21 January 2013)

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Proceedings  

A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks

Zhen Gao, Ruizhe Zhao, Jianhua Ruan BMC Genomics 2013, 14(Suppl 1):S4 (21 January 2013)

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Proceedings  

Genomic differences between cultivated soybean, G. max and its wild relative G. soja

Trupti Joshi, Babu Valliyodan, Jeng-Hung Wu, Suk-Ha Lee, Dong Xu, Henry T Nguyen BMC Genomics 2013, 14(Suppl 1):S5 (21 January 2013)

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Proceedings  

FitSearch: a robust way to interpret a yeast fitness profile in terms of drug's mode-of-action

Minho Lee, Sangjo Han, Hyeshik Chang, Youn-Sig Kwak, David M Weller, Dongsup Kim BMC Genomics 2013, 14(Suppl 1):S6 (21 January 2013)

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Proceedings  

BayesHammer: Bayesian clustering for error correction in single-cell sequencing

Sergey I Nikolenko, Anton I Korobeynikov, Max A Alekseyev BMC Genomics 2013, 14(Suppl 1):S7 (21 January 2013)

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Proceedings  

Genome reassembly with high-throughput sequencing data

Nathaniel Parrish, Benjamin Sudakov, Eleazar Eskin BMC Genomics 2013, 14(Suppl 1):S8 (21 January 2013)

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Proceedings  

Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information

Ellis Patrick, Michael Buckley, David Lin, Yee Yang BMC Genomics 2013, 14(Suppl 1):S9 (21 January 2013)

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Proceedings  

Sum of parts is greater than the whole: inference of common genetic history of populations

Filippo Utro, Marc Pybus, Laxmi Parida BMC Genomics 2013, 14(Suppl 1):S10 (21 January 2013)

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Proceedings  

A probabilistic method for identifying rare variants underlying complex traits

Jiayin Wang, Zhongmeng Zhao, Zhi Cao, Aiyuan Yang, Jin Zhang BMC Genomics 2013, 14(Suppl 1):S11 (21 January 2013)

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Proceedings  

Unraveling overlapping deletions by agglomerative clustering

Roland Wittler BMC Genomics 2013, 14(Suppl 1):S12 (21 January 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings  

Accelerating read mapping with FastHASH

Hongyi Xin, Donghyuk Lee, Farhad Hormozdiari, Samihan Yedkar, Onur Mutlu, Can Alkan BMC Genomics 2013, 14(Suppl 1):S13 (21 January 2013)

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Proceedings  

Scoring relevancy of features based on combinatorial analysis of Lasso with application to lymphoma diagnosis

Habil Zare, Gholamreza Haffari, Arvind Gupta, Ryan R Brinkman BMC Genomics 2013, 14(Suppl 1):S14 (21 January 2013)

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Proceedings  

Inferring evolution of gene duplicates using probabilistic models and nonparametric belief propagation

Jia Zeng, Sridhar Hannenhalli BMC Genomics 2013, 14(Suppl 1):S15 (21 January 2013)

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